Variant report

Variant	rs7777183
Chromosome Location	chr7:122316632-122316633
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1860859	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2080045	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6466831	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6466832	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];0.93[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6948815	1.00[CEU][hapmap];0.92[CHB][hapmap];0.93[JPT][hapmap];0.96[YRI][hapmap]
rs7794272	0.91[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.88[YRI][hapmap]
rs7797250	0.91[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.88[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017029	chr7:121958574-122338623	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv532178	chr7:122203056-122978846	Enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv532179	chr7:122249639-122986259	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
4	nsv532181	chr7:122291571-122684719	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:122293600-122318600	Weak transcription	Lung	lung
2	chr7:122311400-122316800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr7:122311800-122316800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr7:122312000-122316800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr7:122312000-122317000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr7:122312800-122316800	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr7:122314200-122318200	Enhancers	Placenta Amnion	Placenta Amnion
8	chr7:122314400-122317000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr7:122314800-122322800	Weak transcription	Right Atrium	heart
10	chr7:122315000-122318200	Enhancers	Pancreas	Pancrea
11	chr7:122315000-122318400	Weak transcription	Duodenum Mucosa	Duodenum
12	chr7:122315400-122316800	Weak transcription	Stomach Smooth Muscle	stomach
13	chr7:122315400-122317200	Weak transcription	Fetal Stomach	stomach
14	chr7:122315400-122322200	Weak transcription	Fetal Lung	lung
15	chr7:122316200-122318800	Enhancers	HepG2	liver
16	chr7:122316400-122317400	Enhancers	Stomach Mucosa	stomach
17	chr7:122316600-122316800	Enhancers	Left Ventricle	heart
18	chr7:122316600-122316800	Enhancers	Ovary	ovary
19	chr7:122316600-122318200	Enhancers	Gastric	stomach
20	chr7:122316600-122319000	Enhancers	H9 Cell Line	embryonic stem cell
21	chr7:122316600-122319200	Enhancers	HUES48 Cell Line	embryonic stem cell
22	chr7:122316600-122319200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr7:122316600-122320200	Enhancers	H1 Cell Line	embryonic stem cell

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