Variant report

Variant	rs7777733
Chromosome Location	chr7:103013143-103013144
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:103005779..103008431-chr7:103012663..103014193,2	MCF-7	breast:
2	chr7:103010338..103013174-chr7:103051030..103053015,2	K562	blood:
3	chr7:102937192..102939533-chr7:103011262..103013265,2	MCF-7	breast:
4	chr7:103013069..103015927-chr7:103026206..103029016,2	K562	blood:
5	chr7:102998363..103000143-chr7:103011384..103014168,2	K562	blood:
6	chr7:103005337..103007018-chr7:103010875..103013164,2	K562	blood:

Variant related genes	Relation type
ENSG00000105819	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10268808	0.90[EUR][1000 genomes]
rs4351346	0.96[EUR][1000 genomes]
rs62482411	1.00[ASN][1000 genomes]
rs62482412	1.00[ASN][1000 genomes]
rs62482413	0.95[EUR][1000 genomes]
rs62482415	0.96[EUR][1000 genomes]
rs62638824	0.90[EUR][1000 genomes]
rs6972190	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030446	chr7:102932689-103221638	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv491911	chr7:102967150-103403622	Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7777733	RP11-401L13.5	cis	Thyroid	GTEx

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:102989200-103013200	Weak transcription	Stomach Mucosa	stomach
2	chr7:102989800-103021200	Weak transcription	Fetal Heart	heart
3	chr7:103005000-103014800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr7:103009000-103013400	Weak transcription	Ovary	ovary
5	chr7:103009000-103014800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr7:103009000-103014800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
7	chr7:103009000-103014800	Weak transcription	Aorta	Aorta
8	chr7:103009000-103014800	Weak transcription	Brain Cingulate Gyrus	brain
9	chr7:103009000-103014800	Weak transcription	Right Ventricle	heart
10	chr7:103009000-103014800	Weak transcription	A549	lung
11	chr7:103009000-103017200	Weak transcription	Fetal Brain Male	brain
12	chr7:103009000-103019400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr7:103009000-103021000	Weak transcription	Gastric	stomach
14	chr7:103009000-103021000	Weak transcription	Pancreas	Pancrea
15	chr7:103009000-103021200	Weak transcription	Fetal Lung	lung
16	chr7:103009000-103029200	Weak transcription	Spleen	Spleen
17	chr7:103009200-103014200	Weak transcription	Skeletal Muscle Male	skeletal muscle
18	chr7:103009200-103014600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
19	chr7:103009200-103014800	Weak transcription	Primary T cells from cord blood	blood
20	chr7:103009200-103015400	Weak transcription	Primary hematopoietic stem cells	blood
21	chr7:103009200-103018000	Weak transcription	Brain Substantia Nigra	brain
22	chr7:103009200-103020800	Weak transcription	HepG2	liver
23	chr7:103009600-103014800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr7:103010000-103019000	Weak transcription	K562	blood
25	chr7:103010200-103013200	Weak transcription	NHDF-Ad	bronchial
26	chr7:103010400-103014600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
27	chr7:103010600-103013400	Weak transcription	Skeletal Muscle Female	skeletal muscle
28	chr7:103010600-103014000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
29	chr7:103010600-103014200	Weak transcription	Fetal Intestine Large	intestine
30	chr7:103010600-103014200	Weak transcription	Dnd41	blood
31	chr7:103010600-103014800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr7:103010800-103013200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
33	chr7:103010800-103014000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr7:103010800-103015000	Weak transcription	NH-A	brain
35	chr7:103010800-103021000	Weak transcription	Duodenum Mucosa	Duodenum
36	chr7:103011000-103014000	Weak transcription	Left Ventricle	heart
37	chr7:103011200-103013200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr7:103011200-103013200	Weak transcription	Primary T helper cells fromperipheralblood	blood
39	chr7:103011200-103013600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
40	chr7:103011200-103013600	Weak transcription	Fetal Brain Female	brain
41	chr7:103011200-103014000	Weak transcription	HSMM	muscle
42	chr7:103011200-103014400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr7:103011200-103014600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr7:103011200-103014600	Weak transcription	Rectal Mucosa Donor 31	rectum
45	chr7:103011200-103014800	Weak transcription	Sigmoid Colon	Sigmoid Colon
46	chr7:103011200-103015200	Weak transcription	Muscle Satellite Cultured Cells	--
47	chr7:103011200-103019600	Weak transcription	Primary monocytes fromperipheralblood	blood
48	chr7:103011400-103013400	Weak transcription	Liver	Liver
49	chr7:103011400-103013400	Weak transcription	Monocytes-CD14+_RO01746	blood
50	chr7:103011400-103014800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links