Variant report
| Variant | rs7778252 |
|---|---|
| Chromosome Location | chr7:147594096-147594097 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
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rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs10488348 | 0.98[ASN][1000 genomes] |
| rs17236239 | 0.80[AMR][1000 genomes];0.86[ASN][1000 genomes] |
| rs17827310 | 0.80[AMR][1000 genomes];0.85[ASN][1000 genomes] |
| rs2538966 | 0.96[CEU][hapmap] |
| rs2538967 | 0.96[CEU][hapmap] |
| rs2538968 | 0.95[CEU][hapmap] |
| rs2538970 | 0.96[CEU][hapmap] |
| rs2708267 | 0.96[CEU][hapmap] |
| rs4397315 | 0.83[AFR][1000 genomes];0.86[ASN][1000 genomes] |
| rs4431524 | 0.96[CEU][hapmap] |
| rs4725752 | 0.96[CEU][hapmap] |
| rs56073287 | 0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs56265348 | 0.85[AMR][1000 genomes];0.90[ASN][1000 genomes] |
| rs56335186 | 0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs57536589 | 0.80[AMR][1000 genomes];0.86[ASN][1000 genomes] |
| rs62474777 | 0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs62481197 | 0.81[ASN][1000 genomes] |
| rs62481219 | 0.83[AFR][1000 genomes];0.86[ASN][1000 genomes] |
| rs6972811 | 0.91[CEU][hapmap] |
| rs73166262 | 0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs7806114 | 0.84[EUR][1000 genomes] |
| rs9655720 | 0.96[CEU][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1023913 | chr7:147521075-147806318 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 2 | nsv1026058 | chr7:147521109-147783042 | Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 3 | nsv539179 | chr7:147521109-147783042 | Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 4 | nsv934002 | chr7:147521110-147807705 | Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 5 | nsv1017610 | chr7:147523752-147806427 | Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
