Variant report

Variant	rs7779168
Chromosome Location	chr7:104293093-104293094
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs61332047	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7459082	0.82[CEU][hapmap];1.00[GIH][hapmap];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024532	chr7:104281393-104299847	Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7779168	ATXN7L1	cis	cerebellum	SCAN

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:104290400-104295000	Enhancers	Colon Smooth Muscle	Colon
2	chr7:104290400-104295600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr7:104290800-104293200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr7:104291000-104295600	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr7:104291800-104293600	Enhancers	Pancreas	Pancrea
6	chr7:104292000-104295000	Weak transcription	Brain Germinal Matrix	brain
7	chr7:104292000-104296000	Enhancers	Cortex derived primary cultured neurospheres	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links