Variant report

Variant	rs7779521
Chromosome Location	chr7:147368600-147368601
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs17170638	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17170640	0.82[AFR][1000 genomes]
rs17327726	0.84[AFR][1000 genomes]
rs4310124	0.82[AFR][1000 genomes]
rs60842929	1.00[EUR][1000 genomes]
rs6651095	1.00[EUR][1000 genomes]
rs6651096	1.00[EUR][1000 genomes]
rs73461142	1.00[EUR][1000 genomes]
rs73741885	1.00[EUR][1000 genomes]
rs7779787	0.84[AFR][1000 genomes]
rs7799323	0.84[AFR][1000 genomes]
rs7801429	1.00[EUR][1000 genomes]
rs7803219	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs851728	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931005	chr7:146730472-147381257	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:147367000-147369000	Weak transcription	Brain Substantia Nigra	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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