Variant report

Variant	rs7779787
Chromosome Location	chr7:147368736-147368737
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs1525254	0.93[EUR][1000 genomes]
rs17170638	0.84[ASW][hapmap];1.00[CHB][hapmap];0.88[LWK][hapmap];0.93[MEX][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs17170640	1.00[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs17327726	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2190915	1.00[CHB][hapmap]
rs2373175	1.00[CHB][hapmap]
rs2373176	1.00[CHB][hapmap]
rs2888515	1.00[CHB][hapmap]
rs4310123	1.00[CHB][hapmap]
rs4310124	0.93[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs4379380	1.00[CHB][hapmap]
rs4383899	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4383900	1.00[CHB][hapmap]
rs4436047	1.00[CHB][hapmap]
rs4455752	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4520083	1.00[CHB][hapmap]
rs56339188	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs58044035	0.98[EUR][1000 genomes]
rs60448751	0.98[EUR][1000 genomes]
rs6948030	1.00[CEU][hapmap];0.92[TSI][hapmap]
rs6964327	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[MEX][hapmap];0.85[TSI][hapmap]
rs6964959	1.00[CHB][hapmap]
rs6970360	1.00[CHB][hapmap]
rs731565	1.00[CHB][hapmap];0.93[MEX][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73741217	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73741883	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7457657	1.00[CHB][hapmap]
rs758259	1.00[CHB][hapmap]
rs7779521	0.84[AFR][1000 genomes]
rs7786677	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs7799323	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7803219	1.00[CHB][hapmap];0.90[YRI][hapmap];0.86[AFR][1000 genomes]
rs851726	1.00[CHB][hapmap];0.81[EUR][1000 genomes]
rs851727	1.00[CHB][hapmap];0.93[MEX][hapmap];0.86[TSI][hapmap];0.81[EUR][1000 genomes]
rs851734	1.00[CHB][hapmap]
rs971439	1.00[CEU][hapmap];0.82[YRI][hapmap];0.98[EUR][1000 genomes]
rs971440	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[YRI][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931005	chr7:146730472-147381257	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7779787	PIP4K2B	trans	brain	seeQTL

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:147367000-147369000	Weak transcription	Brain Substantia Nigra	brain

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