Variant report

Variant	rs7780253
Chromosome Location	chr7:126333583-126333584
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:126331640..126334472-chr7:127032502..127035223,2	K562	blood:
2	chr7:126329105..126333653-chr7:126334255..126342288,12	K562	blood:

Variant related genes	Relation type
ENSG00000048405	Chromatin interaction

Extended variants
information (count: 160 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:155)

rs_ID	r²[population]
rs1008907	0.88[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10232001	0.90[CHB][hapmap];0.86[ASN][1000 genomes]
rs10234189	0.95[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10256873	0.81[CHB][hapmap]
rs10280247	0.91[CHB][hapmap];0.86[ASN][1000 genomes]
rs10487454	0.87[CHB][hapmap];0.95[JPT][hapmap]
rs10487455	0.87[CHB][hapmap];0.95[JPT][hapmap]
rs10487456	0.87[CHB][hapmap];0.95[JPT][hapmap]
rs10808224	0.87[CHB][hapmap];0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs10808227	0.81[CEU][hapmap];0.81[CHB][hapmap];0.82[JPT][hapmap];0.80[YRI][hapmap]
rs10954120	0.87[CHB][hapmap];0.95[JPT][hapmap]
rs10954131	0.87[CHB][hapmap];0.95[JPT][hapmap]
rs10954134	0.81[CEU][hapmap];0.81[CHB][hapmap];0.87[JPT][hapmap]
rs10954135	0.82[CEU][hapmap];0.81[CHB][hapmap];0.87[JPT][hapmap];0.81[YRI][hapmap]
rs10954138	0.81[JPT][hapmap]
rs11486997	0.87[CHB][hapmap];0.95[JPT][hapmap]
rs11971186	0.80[YRI][hapmap]
rs11971474	0.87[CHB][hapmap];0.95[JPT][hapmap]
rs11976897	0.82[ASN][1000 genomes]
rs11978951	0.89[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap]
rs12154335	0.86[CHB][hapmap];0.95[JPT][hapmap]
rs12532564	0.87[CHB][hapmap];0.95[JPT][hapmap]
rs12533174	0.87[CHB][hapmap];0.95[JPT][hapmap]
rs12533463	0.87[CHB][hapmap];0.95[JPT][hapmap]
rs12533543	0.86[CHB][hapmap];0.95[JPT][hapmap]
rs12534101	0.82[JPT][hapmap]
rs12536122	0.87[CHB][hapmap];0.95[JPT][hapmap]
rs12537689	0.87[CHB][hapmap];0.95[JPT][hapmap]
rs12538680	0.87[CHB][hapmap];0.95[JPT][hapmap]
rs12538710	0.87[CHB][hapmap];0.95[JPT][hapmap]
rs12538744	0.85[CHB][hapmap];0.95[JPT][hapmap]
rs12538796	0.87[CHB][hapmap];0.95[JPT][hapmap]
rs12540159	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs12666621	0.86[CHB][hapmap];0.95[JPT][hapmap]
rs12674181	0.87[CHB][hapmap];0.95[JPT][hapmap]
rs12706744	0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1361989	0.87[CHB][hapmap];0.95[JPT][hapmap]
rs1361990	0.86[CHB][hapmap];0.95[JPT][hapmap]
rs1419476	0.87[CHB][hapmap];0.95[JPT][hapmap]
rs1419479	0.86[CHB][hapmap];0.95[JPT][hapmap]
rs1419480	0.86[CHB][hapmap];0.95[JPT][hapmap]
rs1419481	0.87[CHB][hapmap];0.95[JPT][hapmap]
rs1419484	0.86[CHB][hapmap];0.95[JPT][hapmap]
rs1419485	0.86[CHB][hapmap];0.95[JPT][hapmap]
rs1419486	0.87[CHB][hapmap];0.95[JPT][hapmap]
rs1419487	0.87[CHB][hapmap];0.95[JPT][hapmap]
rs1419488	0.87[CHB][hapmap];0.95[JPT][hapmap]
rs1419489	0.87[CHB][hapmap];0.95[JPT][hapmap]
rs1419493	0.95[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1419494	0.87[CHB][hapmap];0.95[JPT][hapmap]
rs1419495	0.82[CHB][hapmap];0.95[JPT][hapmap]
rs1419498	0.82[CHB][hapmap];0.86[JPT][hapmap]
rs1468155	0.86[CHB][hapmap];0.95[JPT][hapmap]
rs1468156	0.87[CHB][hapmap];0.95[JPT][hapmap]
rs1579215	0.86[CHB][hapmap];0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs17609121	0.87[CHB][hapmap];0.91[JPT][hapmap]
rs17610345	0.87[CHB][hapmap];0.95[JPT][hapmap]
rs17610889	0.87[CHB][hapmap];0.95[JPT][hapmap]
rs17612358	0.87[CHB][hapmap];0.95[JPT][hapmap]
rs17682376	0.87[CHB][hapmap];0.91[JPT][hapmap]
rs17683130	0.87[CHB][hapmap];0.95[JPT][hapmap]
rs17683331	0.82[CHB][hapmap];0.95[JPT][hapmap]
rs17683777	0.84[CHB][hapmap];0.95[JPT][hapmap]
rs17684332	0.87[CHB][hapmap];0.95[JPT][hapmap]
rs17690706	0.87[CHB][hapmap];0.95[JPT][hapmap]
rs1815971	0.87[CHB][hapmap];0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs1815972	0.81[ASN][1000 genomes]
rs1894733	0.87[CHB][hapmap];0.95[JPT][hapmap]
rs1946112	0.90[CHB][hapmap];0.95[JPT][hapmap]
rs2027988	0.82[CHB][hapmap];0.95[JPT][hapmap]
rs2027989	0.87[CHB][hapmap];0.95[JPT][hapmap]
rs2073862	0.87[CHB][hapmap];0.95[JPT][hapmap]
rs2106308	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs2106309	0.87[CHB][hapmap];0.95[JPT][hapmap]
rs2106310	0.87[CHB][hapmap];0.95[JPT][hapmap]
rs2106311	0.86[CHB][hapmap];0.95[JPT][hapmap]
rs2106312	0.86[CHB][hapmap];0.95[JPT][hapmap]
rs2106313	0.87[CHB][hapmap];0.95[JPT][hapmap]
rs2106314	0.87[CHB][hapmap];0.95[JPT][hapmap]
rs2237743	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs2237745	0.87[CHB][hapmap];0.95[JPT][hapmap]
rs2237747	0.87[CHB][hapmap];0.95[JPT][hapmap]
rs2237750	0.87[CHB][hapmap];0.95[JPT][hapmap]
rs2237751	0.87[CHB][hapmap];0.95[JPT][hapmap]
rs2237752	0.86[CHB][hapmap];0.95[JPT][hapmap]
rs2237756	0.94[JPT][hapmap]
rs2237762	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2237767	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs2237768	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2283070	0.82[CEU][hapmap];0.81[CHB][hapmap];0.87[JPT][hapmap]
rs2299465	0.87[CHB][hapmap];0.95[JPT][hapmap]
rs2299466	0.87[CHB][hapmap];0.91[JPT][hapmap]
rs2299467	0.87[CHB][hapmap];0.95[JPT][hapmap]
rs2299468	0.87[CHB][hapmap];0.95[JPT][hapmap]
rs2299470	0.86[CHB][hapmap];0.95[JPT][hapmap]
rs2299475	0.87[CHB][hapmap];0.95[JPT][hapmap]
rs2299476	0.86[CHB][hapmap];0.95[JPT][hapmap]
rs2299477	0.87[CHB][hapmap];0.95[JPT][hapmap]
rs2299478	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs2299479	0.87[CHB][hapmap];0.95[JPT][hapmap]
rs2299480	0.86[CHB][hapmap];0.95[JPT][hapmap]
rs2299484	0.87[CHB][hapmap];0.95[JPT][hapmap]
rs2299486	0.90[CHB][hapmap];0.95[JPT][hapmap]
rs2299487	0.87[CHB][hapmap];0.95[JPT][hapmap]
rs2299488	0.87[CHB][hapmap];0.95[JPT][hapmap]
rs2299491	0.86[CHB][hapmap];0.95[JPT][hapmap]
rs2299499	0.83[ASN][1000 genomes]
rs2299500	0.88[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap]
rs2402816	0.81[CHB][hapmap];0.86[JPT][hapmap]
rs2402822	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2896372	0.87[CHB][hapmap];0.95[JPT][hapmap]
rs2896373	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs3802001	0.86[CHB][hapmap];0.95[JPT][hapmap]
rs3808150	0.82[CEU][hapmap]
rs3808156	0.87[CHB][hapmap];0.95[JPT][hapmap]
rs3808157	0.87[CHB][hapmap];0.95[JPT][hapmap]
rs3808161	0.87[CHB][hapmap];0.95[JPT][hapmap]
rs3824018	0.87[CHB][hapmap];0.95[JPT][hapmap]
rs4141361	0.85[CHB][hapmap];0.95[JPT][hapmap]
rs4236623	0.95[CHB][hapmap];0.95[JPT][hapmap];0.87[ASN][1000 genomes]
rs4236624	0.95[CHB][hapmap];0.95[JPT][hapmap];0.87[ASN][1000 genomes]
rs4380862	0.95[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4728050	0.91[CHB][hapmap];0.86[ASN][1000 genomes]
rs6467092	0.86[CHB][hapmap];0.95[JPT][hapmap]
rs6467095	0.91[CHB][hapmap];0.86[ASN][1000 genomes]
rs6467096	0.91[CHB][hapmap];0.86[ASN][1000 genomes]
rs6467097	0.90[CHB][hapmap];0.86[ASN][1000 genomes]
rs6963108	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6964806	0.86[CHB][hapmap];0.95[JPT][hapmap]
rs6969693	0.85[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6974018	0.89[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6974396	0.85[CHB][hapmap];0.95[JPT][hapmap]
rs6976797	0.90[CHB][hapmap];0.86[ASN][1000 genomes]
rs728600	0.86[CHB][hapmap];0.95[JPT][hapmap]
rs728601	0.87[CHB][hapmap];0.95[JPT][hapmap]
rs728602	0.87[CHB][hapmap];0.95[JPT][hapmap]
rs737702	0.95[CHB][hapmap];0.95[JPT][hapmap];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7455156	0.87[CHB][hapmap];0.95[JPT][hapmap]
rs756900	0.89[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7779831	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7784073	0.88[CEU][hapmap];0.81[CHB][hapmap];0.95[JPT][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7790017	0.87[CHB][hapmap];0.95[JPT][hapmap]
rs7791956	0.80[ASN][1000 genomes]
rs7792592	0.86[CHB][hapmap];0.95[JPT][hapmap];0.81[ASN][1000 genomes]
rs7792700	0.86[CHB][hapmap];0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs7794592	0.85[ASN][1000 genomes]
rs7804379	0.82[JPT][hapmap]
rs7804521	0.89[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap]
rs886176	0.88[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9641799	0.87[CHB][hapmap];0.95[JPT][hapmap]
rs9641800	0.87[CHB][hapmap];0.91[JPT][hapmap]
rs9649507	0.81[CEU][hapmap];0.81[CHB][hapmap];0.86[JPT][hapmap];0.85[YRI][hapmap]
rs975266	0.87[CHB][hapmap];0.95[JPT][hapmap]
rs9942596	0.87[CHB][hapmap];0.95[JPT][hapmap]
rs9942681	0.86[CHB][hapmap];0.91[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529300	chr7:125669493-126587858	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv1032938	chr7:126067684-126587859	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv539119	chr7:126067684-126587859	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv889187	chr7:126219766-126478190	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv1032108	chr7:126278349-126362592	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:126332200-126334200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr7:126332400-126339000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr7:126332800-126336600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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