Variant report

Variant	rs7780522
Chromosome Location	chr7:137701337-137701338
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10235324	1.00[CEU][hapmap];0.86[CHB][hapmap];0.82[JPT][hapmap];0.92[EUR][1000 genomes]
rs10271444	1.00[CEU][hapmap];0.86[CHB][hapmap];0.82[JPT][hapmap];0.98[EUR][1000 genomes]
rs10275371	1.00[CEU][hapmap];0.87[CHB][hapmap];0.83[JPT][hapmap];0.96[EUR][1000 genomes]
rs11971315	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17169503	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57516363	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58616293	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6955277	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73729542	0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv518070	chr7:137534627-137808839	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:137688000-137703800	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr7:137699800-137708800	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr7:137700400-137703800	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr7:137700600-137701800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr7:137700600-137702800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr7:137700600-137703800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr7:137700600-137708800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr7:137700800-137709600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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