Variant report

Variant	rs7781203
Chromosome Location	chr7:105473989-105473990
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:105471516..105474316-chr7:105479305..105481935,2	MCF-7	breast:
2	chr7:105463470..105465747-chr7:105472963..105475389,2	K562	blood:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10229491	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2108324	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs212412	0.94[ASW][hapmap];1.00[LWK][hapmap];0.98[MKK][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs212413	0.96[YRI][hapmap];0.96[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs212414	1.00[CHB][hapmap]
rs4727628	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs740307	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs740309	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[LWK][hapmap];0.94[MEX][hapmap];0.98[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7792471	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs886797	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027213	chr7:105438610-106022869	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:105430200-105479200	Weak transcription	Aorta	Aorta
2	chr7:105449000-105479200	Weak transcription	Esophagus	oesophagus
3	chr7:105457200-105478000	Weak transcription	Brain Anterior Caudate	brain
4	chr7:105465400-105506600	Weak transcription	Fetal Intestine Large	intestine
5	chr7:105468200-105478200	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr7:105468400-105478800	Weak transcription	Fetal Intestine Small	intestine
7	chr7:105469000-105479200	Weak transcription	Right Atrium	heart
8	chr7:105471400-105475000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr7:105471400-105476400	Weak transcription	Brain Germinal Matrix	brain
10	chr7:105471400-105477400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr7:105471600-105476800	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr7:105471600-105478000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr7:105471600-105478000	Weak transcription	Brain Hippocampus Middle	brain
14	chr7:105471600-105478000	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr7:105471600-105479200	Weak transcription	Fetal Thymus	thymus
16	chr7:105471600-105479800	Weak transcription	Gastric	stomach
17	chr7:105471800-105475200	Weak transcription	H1 Cell Line	embryonic stem cell
18	chr7:105471800-105476000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr7:105471800-105476000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr7:105471800-105476400	Weak transcription	Fetal Brain Female	brain
21	chr7:105471800-105478000	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr7:105471800-105478000	Weak transcription	Lung	lung
23	chr7:105471800-105478000	Weak transcription	Right Ventricle	heart
24	chr7:105471800-105478000	Weak transcription	Skeletal Muscle Female	skeletal muscle
25	chr7:105471800-105478800	Weak transcription	Ovary	ovary
26	chr7:105471800-105483600	Weak transcription	Pancreas	Pancrea
27	chr7:105471800-105484000	Weak transcription	Primary T cells from cord blood	blood
28	chr7:105472000-105475800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
29	chr7:105472000-105478200	Weak transcription	Sigmoid Colon	Sigmoid Colon
30	chr7:105472200-105475000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr7:105472200-105476000	Weak transcription	HepG2	liver
32	chr7:105472200-105478600	Weak transcription	Duodenum Mucosa	Duodenum
33	chr7:105472400-105477800	Weak transcription	Adipose Nuclei	Adipose
34	chr7:105472400-105478000	Weak transcription	Fetal Muscle Leg	muscle
35	chr7:105472400-105478000	Weak transcription	Left Ventricle	heart
36	chr7:105472400-105478800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr7:105472400-105479000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr7:105472400-105489800	Weak transcription	Placenta Amnion	Placenta Amnion
39	chr7:105472600-105474000	Enhancers	iPS-20b Cell Line	embryonic stem cell
40	chr7:105472600-105475800	Weak transcription	Fetal Stomach	stomach
41	chr7:105472600-105476000	Weak transcription	Cortex derived primary cultured neurospheres	brain
42	chr7:105472600-105478000	Weak transcription	Fetal Heart	heart
43	chr7:105472600-105478000	Weak transcription	Psoas Muscle	Psoas
44	chr7:105472600-105478000	Weak transcription	Rectal Smooth Muscle	rectum
45	chr7:105472600-105478000	Weak transcription	Skeletal Muscle Male	skeletal muscle
46	chr7:105472600-105478000	Weak transcription	Stomach Smooth Muscle	stomach
47	chr7:105472600-105479000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr7:105473000-105494400	Weak transcription	Fetal Lung	lung
49	chr7:105473200-105478000	Weak transcription	NHDF-Ad	bronchial
50	chr7:105473200-105478000	Weak transcription	NHLF	lung

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