Variant report

Variant	rs7781680
Chromosome Location	chr7:147725153-147725154
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:147719801..147721661-chr7:147724450..147725973,2	K562	blood:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10240503	0.80[CEU][hapmap]
rs10261595	0.84[JPT][hapmap]
rs10261693	0.80[JPT][hapmap]
rs10276996	0.84[JPT][hapmap]
rs10281326	0.95[CHB][hapmap]
rs10485853	0.84[JPT][hapmap]
rs11762995	0.88[CEU][hapmap]
rs11766463	0.89[CEU][hapmap];0.85[YRI][hapmap];0.87[AFR][1000 genomes]
rs11771401	0.89[CEU][hapmap]
rs11773676	0.88[CEU][hapmap]
rs12533565	0.92[ASN][1000 genomes]
rs12536135	0.80[JPT][hapmap]
rs12539425	0.80[JPT][hapmap]
rs12539685	0.95[CHB][hapmap];0.85[JPT][hapmap];0.95[ASN][1000 genomes]
rs12540049	0.95[CHB][hapmap];0.80[JPT][hapmap];0.92[ASN][1000 genomes]
rs12540218	0.80[JPT][hapmap]
rs12667420	0.95[CHB][hapmap];0.85[JPT][hapmap];0.95[ASN][1000 genomes]
rs13228312	0.95[CHB][hapmap];0.95[ASN][1000 genomes]
rs13228553	0.80[JPT][hapmap];0.82[ASN][1000 genomes]
rs13233277	0.85[CHB][hapmap];0.83[JPT][hapmap]
rs17170792	0.84[ASN][1000 genomes]
rs17170793	0.81[CHB][hapmap];0.80[JPT][hapmap];0.84[ASN][1000 genomes]
rs17170794	0.81[CHB][hapmap];0.80[JPT][hapmap];0.84[ASN][1000 genomes]
rs2707555	0.89[CEU][hapmap]
rs34378091	0.84[ASN][1000 genomes]
rs34842703	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34910390	0.82[ASN][1000 genomes]
rs35631331	0.82[ASN][1000 genomes]
rs6955458	0.81[CHB][hapmap];0.80[JPT][hapmap];0.84[ASN][1000 genomes]
rs6957073	0.95[CHB][hapmap];0.85[JPT][hapmap]
rs719310	0.80[JPT][hapmap]
rs719312	0.80[JPT][hapmap]
rs7779961	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7780285	0.89[CEU][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs7785350	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.87[YRI][hapmap];0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7800075	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023913	chr7:147521075-147806318	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1026058	chr7:147521109-147783042	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv539179	chr7:147521109-147783042	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv934002	chr7:147521110-147807705	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1017610	chr7:147523752-147806427	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:147724200-147726200	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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