Variant report

Variant	rs7782964
Chromosome Location	chr7:47905044-47905045
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10951932	0.80[CHB][hapmap];1.00[CHD][hapmap]
rs10951935	0.90[CHB][hapmap];0.92[CHD][hapmap]
rs11520726	0.90[CHB][hapmap]
rs12536468	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17131893	0.81[CHB][hapmap];1.00[JPT][hapmap]
rs17131896	1.00[JPT][hapmap]
rs17711066	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2004959	0.81[CHB][hapmap];1.00[JPT][hapmap]
rs2123612	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2167877	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs2348656	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2348657	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs2348658	1.00[JPT][hapmap]
rs2348659	1.00[JPT][hapmap]
rs2348660	0.90[CHB][hapmap];0.91[CHD][hapmap]
rs2348661	0.90[CHB][hapmap];0.92[CHD][hapmap]
rs2881990	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3736548	1.00[JPT][hapmap]
rs4720619	0.90[CHB][hapmap]
rs4720621	0.90[CHB][hapmap];0.92[CHD][hapmap]
rs4720622	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs4724654	0.90[CHB][hapmap];0.91[CHD][hapmap]
rs4724657	0.90[CHB][hapmap];0.92[CHD][hapmap]
rs4724660	1.00[JPT][hapmap]
rs57214397	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6949590	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs6950006	0.90[CHB][hapmap];1.00[CHD][hapmap]
rs6961473	0.90[CHB][hapmap];0.92[CHD][hapmap]
rs6965759	0.90[CHB][hapmap];1.00[CHD][hapmap]
rs6972918	0.90[CHB][hapmap];0.92[CHD][hapmap]
rs6977363	0.86[CHB][hapmap]
rs753432	0.81[CHB][hapmap];1.00[JPT][hapmap]
rs7800263	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9691664	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];0.93[TSI][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9918570	0.81[CHB][hapmap];1.00[JPT][hapmap]
rs9918571	0.90[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026223	chr7:47560728-48243287	Genic enhancers Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv888003	chr7:47694270-47907214	Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv869585	chr7:47765428-48151324	Flanking Active TSS Enhancers Strong transcription Bivalent/Poised TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
4	nsv830991	chr7:47854530-48025996	Weak transcription Active TSS Genic enhancers Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv532120	chr7:47882757-48195869	Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
6	nsv606892	chr7:47903141-47930180	Enhancers Genic enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:47886200-47911000	Weak transcription	Psoas Muscle	Psoas
2	chr7:47886400-47905600	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr7:47886800-47916000	Weak transcription	Right Ventricle	heart
4	chr7:47897200-47916000	Weak transcription	Left Ventricle	heart
5	chr7:47901200-47918200	Weak transcription	Right Atrium	heart
6	chr7:47902600-47916000	Weak transcription	Lung	lung
7	chr7:47903200-47922400	Weak transcription	Adipose Nuclei	Adipose
8	chr7:47903200-47923800	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr7:47903400-47945000	Weak transcription	Brain Angular Gyrus	brain
10	chr7:47904800-47907800	Enhancers	Fetal Lung	lung

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