Variant report

Variant	rs7783988
Chromosome Location	chr7:127088241-127088242
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:127031068..127034269-chr7:127084313..127088617,4	K562	blood:

Variant related genes	Relation type
ENSG00000048405	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10155881	0.87[AFR][1000 genomes]
rs10267668	0.84[AFR][1000 genomes]
rs10267702	0.90[AFR][1000 genomes]
rs10267767	0.90[AFR][1000 genomes]
rs10280110	0.90[AFR][1000 genomes]
rs11973012	0.90[CEU][hapmap];0.85[CHB][hapmap];0.93[CHD][hapmap];0.90[TSI][hapmap];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11973576	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11973624	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11975345	0.81[CHB][hapmap]
rs11976330	0.90[CEU][hapmap];0.81[CHB][hapmap];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11977193	0.85[EUR][1000 genomes]
rs1582254	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17658240	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17713428	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17714259	0.90[CEU][hapmap];0.92[CHB][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17714284	0.90[CEU][hapmap];0.92[CHB][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28444122	0.82[AFR][1000 genomes]
rs28791818	0.88[AFR][1000 genomes]
rs55638956	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55918628	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55947450	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56110618	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56130760	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56284869	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6978712	0.89[CEU][hapmap];0.92[CHB][hapmap];1.00[CHD][hapmap];0.90[TSI][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7457977	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7778682	0.83[CHB][hapmap];0.86[ASN][1000 genomes]
rs7784284	0.86[ASN][1000 genomes]

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:127087400-127091200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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