Variant report

Variant	rs7784639
Chromosome Location	chr7:104285271-104285272
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10246540	0.81[CHB][hapmap];0.88[JPT][hapmap]
rs10250078	1.00[AMR][1000 genomes]
rs10271797	1.00[YRI][hapmap]
rs10272959	0.81[CHB][hapmap];1.00[JPT][hapmap]
rs11761636	0.89[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11773248	0.91[CHB][hapmap];0.88[JPT][hapmap];0.84[ASN][1000 genomes]
rs11977439	0.83[CHB][hapmap];0.88[JPT][hapmap]
rs11983223	0.83[CHB][hapmap];1.00[JPT][hapmap]
rs1465342	0.91[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.93[AFR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1468861	1.00[AMR][1000 genomes]
rs1468864	0.90[YRI][hapmap];0.89[AFR][1000 genomes]
rs1548938	0.80[YRI][hapmap]
rs16870065	0.81[CHB][hapmap];1.00[JPT][hapmap]
rs17139105	0.81[CHB][hapmap];1.00[JPT][hapmap]
rs17139109	0.81[CHB][hapmap];1.00[JPT][hapmap]
rs17139166	0.81[CHB][hapmap];1.00[JPT][hapmap]
rs17139722	0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17139736	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs17141055	1.00[EUR][1000 genomes]
rs17141299	1.00[EUR][1000 genomes]
rs1861610	1.00[AMR][1000 genomes]
rs2008042	0.89[AFR][1000 genomes]
rs2080483	0.90[YRI][hapmap]
rs2193198	0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs2193199	1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2193200	0.91[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap]
rs2193205	0.81[CHB][hapmap];1.00[JPT][hapmap]
rs2193212	0.81[CHB][hapmap];0.88[JPT][hapmap]
rs2193214	0.81[CHB][hapmap];1.00[JPT][hapmap]
rs2385238	0.80[YRI][hapmap]
rs2385247	0.88[JPT][hapmap];0.89[ASN][1000 genomes]
rs2385248	0.81[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs2385251	1.00[YRI][hapmap]
rs2385254	0.91[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.89[AFR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2470962	1.00[AMR][1000 genomes]
rs3919550	0.81[CHB][hapmap];0.88[JPT][hapmap]
rs4131017	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs4140743	1.00[EUR][1000 genomes]
rs4357228	0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4431535	1.00[AMR][1000 genomes]
rs4549708	1.00[EUR][1000 genomes]
rs4612275	1.00[JPT][hapmap]
rs4623345	1.00[AMR][1000 genomes]
rs4730033	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4730046	1.00[AMR][1000 genomes]
rs57123751	1.00[EUR][1000 genomes]
rs57138274	1.00[EUR][1000 genomes]
rs57698969	1.00[EUR][1000 genomes]
rs57935592	1.00[EUR][1000 genomes]
rs61685636	1.00[EUR][1000 genomes]
rs6944590	0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6948948	0.81[CHB][hapmap];0.88[JPT][hapmap]
rs6958342	1.00[AMR][1000 genomes]
rs6960459	0.88[AFR][1000 genomes]
rs6967399	0.81[CHB][hapmap];0.88[JPT][hapmap]
rs759533	0.81[CHB][hapmap];1.00[JPT][hapmap]
rs7801079	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7801340	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7805947	0.81[CHB][hapmap];0.88[JPT][hapmap]
rs929661	0.81[CHB][hapmap];0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024532	chr7:104281393-104299847	Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:104285000-104290400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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