Variant report

Variant	rs7785037
Chromosome Location	chr7:137881746-137881747
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1373677	0.81[ASN][1000 genomes]
rs1489634	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1552583	1.00[JPT][hapmap];0.86[YRI][hapmap];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1973325	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1973326	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2450848	1.00[JPT][hapmap]
rs2718128	0.89[JPT][hapmap];0.83[ASN][1000 genomes]
rs4321918	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs61311213	0.83[ASN][1000 genomes]
rs73729501	0.83[ASN][1000 genomes]
rs7785014	0.82[EUR][1000 genomes]
rs7794092	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34048	chr7:137724092-138213119	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:137873600-137893800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr7:137878600-137884000	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr7:137879400-137883400	Enhancers	Placenta	Placenta
4	chr7:137879600-137882800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
5	chr7:137879800-137882800	Enhancers	Stomach Mucosa	stomach
6	chr7:137880200-137882800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr7:137880400-137882000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr7:137880400-137882000	Weak transcription	Fetal Stomach	stomach
9	chr7:137880400-137882000	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr7:137880400-137888600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr7:137880400-137893800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr7:137881000-137882200	Weak transcription	Gastric	stomach
13	chr7:137881000-137882200	Enhancers	Pancreas	Pancrea
14	chr7:137881400-137882200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr7:137881600-137882200	Weak transcription	Lung	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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