Variant report

Variant	rs7785266
Chromosome Location	chr7:101592038-101592039
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:101586695..101588512-chr7:101590160..101592352,2	K562	blood:
2	chr7:101455300..101463809-chr7:101582792..101593292,40	MCF-7	breast:
3	chr7:101591850..101595960-chr7:101603598..101607099,3	MCF-7	breast:
4	chr7:101591380..101593397-chr7:101609992..101611735,2	K562	blood:
5	chr7:101583175..101586097-chr7:101587882..101593351,5	K562	blood:
6	chr7:101588702..101590928-chr7:101591262..101593681,2	MCF-7	breast:
7	chr7:101587051..101588578-chr7:101589837..101592703,2	MCF-7	breast:
8	chr7:101584398..101586117-chr7:101590854..101593912,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000257923	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10231075	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10236615	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.92[ASN][1000 genomes]
rs10238938	0.82[ASN][1000 genomes]
rs10254769	0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs10259603	1.00[JPT][hapmap]
rs10267777	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10276057	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10488042	1.00[JPT][hapmap]
rs10488043	1.00[JPT][hapmap]
rs12533258	1.00[ASN][1000 genomes]
rs12537526	1.00[JPT][hapmap]
rs1541437	0.89[YRI][hapmap]
rs17408612	1.00[JPT][hapmap]
rs17408640	1.00[JPT][hapmap]
rs17487076	1.00[JPT][hapmap]
rs17487672	1.00[JPT][hapmap]
rs202142	1.00[JPT][hapmap]
rs202147	1.00[JPT][hapmap]
rs202150	1.00[JPT][hapmap]
rs202152	1.00[JPT][hapmap]
rs2031085	1.00[CHB][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.92[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2041008	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6465838	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6465839	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs6465840	0.82[AFR][1000 genomes]
rs6973312	1.00[JPT][hapmap]
rs7780631	1.00[JPT][hapmap]
rs7791278	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7796818	0.87[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.84[LWK][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7796995	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7805379	1.00[JPT][hapmap]
rs7810922	0.87[ASW][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];0.93[YRI][hapmap];0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs9969318	1.00[CHB][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.89[AMR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024319	chr7:101368299-101668159	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv539047	chr7:101368299-101668159	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
3	nsv1020372	chr7:101420819-101718950	Enhancers Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
4	nsv482846	chr7:101539981-101707666	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv888827	chr7:101562674-101650302	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:95 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:101567000-101596000	Weak transcription	Primary monocytes fromperipheralblood	blood
2	chr7:101570200-101597000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr7:101577600-101595600	Weak transcription	Primary T cells from cord blood	blood
4	chr7:101578200-101612000	Weak transcription	HepG2	liver
5	chr7:101578200-101671200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr7:101583400-101608000	Weak transcription	Primary B cells from cord blood	blood
7	chr7:101584400-101596200	Weak transcription	Primary B cells from peripheral blood	blood
8	chr7:101585600-101594400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr7:101585800-101592400	Enhancers	Left Ventricle	heart
10	chr7:101586000-101603200	Weak transcription	Fetal Intestine Large	intestine
11	chr7:101586200-101594000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr7:101586200-101595800	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr7:101586200-101595800	Weak transcription	GM12878-XiMat	blood
14	chr7:101586400-101593200	Weak transcription	Hela-S3	cervix
15	chr7:101586400-101595800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr7:101586400-101595800	Weak transcription	Colonic Mucosa	Colon
17	chr7:101586400-101595800	Weak transcription	NHDF-Ad	bronchial
18	chr7:101586400-101596000	Weak transcription	HMEC	breast
19	chr7:101586400-101596200	Weak transcription	NHEK	skin
20	chr7:101586400-101615800	Weak transcription	Duodenum Mucosa	Duodenum
21	chr7:101586400-101620600	Weak transcription	Adipose Nuclei	Adipose
22	chr7:101587000-101592200	Enhancers	Fetal Muscle Leg	muscle
23	chr7:101587000-101598000	Strong transcription	Fetal Intestine Small	intestine
24	chr7:101587000-101601200	Weak transcription	Rectal Mucosa Donor 29	rectum
25	chr7:101587800-101596000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr7:101588400-101595600	Weak transcription	Dnd41	blood
27	chr7:101588400-101595800	Weak transcription	Spleen	Spleen
28	chr7:101588600-101596000	Weak transcription	Placenta	Placenta
29	chr7:101588800-101594800	Weak transcription	Primary neutrophils fromperipheralblood	blood
30	chr7:101589200-101594000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr7:101589400-101595400	Weak transcription	Placenta Amnion	Placenta Amnion
32	chr7:101589400-101595800	Weak transcription	Gastric	stomach
33	chr7:101589600-101595600	Weak transcription	Esophagus	oesophagus
34	chr7:101589600-101595800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr7:101590000-101592200	Enhancers	Fetal Stomach	stomach
36	chr7:101590000-101592200	Enhancers	Ovary	ovary
37	chr7:101590000-101593000	Weak transcription	Fetal Thymus	thymus
38	chr7:101590200-101592400	Enhancers	Right Atrium	heart
39	chr7:101590400-101592600	Enhancers	Brain Germinal Matrix	brain
40	chr7:101590600-101592200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr7:101590600-101592200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
42	chr7:101590600-101592200	Enhancers	Fetal Lung	lung
43	chr7:101590600-101592200	Enhancers	Pancreas	Pancrea
44	chr7:101590800-101592200	Enhancers	Brain Angular Gyrus	brain
45	chr7:101590800-101592200	Enhancers	Brain Hippocampus Middle	brain
46	chr7:101590800-101592200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
47	chr7:101590800-101592200	Enhancers	Stomach Mucosa	stomach
48	chr7:101590800-101592400	Enhancers	Fetal Brain Female	brain
49	chr7:101591000-101592200	Enhancers	Brain Anterior Caudate	brain
50	chr7:101591200-101592200	Enhancers	Brain Inferior Temporal Lobe	brain

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