Variant report

Variant	rs7786261
Chromosome Location	chr7:105444899-105444900
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:105443038..105446248-chr7:105449181..105451715,3	K562	blood:
2	chr7:105440792..105442461-chr7:105443964..105445643,2	K562	blood:
3	chr7:105417500..105419395-chr7:105442507..105444992,2	MCF-7	breast:
4	chr7:105441425..105445126-chr7:105448801..105451715,4	K562	blood:
5	chr7:105432350..105434040-chr7:105443762..105445723,2	MCF-7	breast:
6	chr7:105438530..105440679-chr7:105443044..105444948,2	K562	blood:
7	chr7:105438596..105441130-chr7:105444567..105447307,2	MCF-7	breast:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs510382	1.00[AMR][1000 genomes]
rs533332	1.00[AMR][1000 genomes]
rs6950432	1.00[AMR][1000 genomes]
rs6958203	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6964480	1.00[AMR][1000 genomes]
rs6977858	1.00[AMR][1000 genomes]
rs7793664	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027213	chr7:105438610-106022869	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:93 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:105418400-105446400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr7:105422000-105452000	Weak transcription	Colonic Mucosa	Colon
3	chr7:105429200-105446000	Weak transcription	Brain Anterior Caudate	brain
4	chr7:105430000-105447000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr7:105430200-105479200	Weak transcription	Aorta	Aorta
6	chr7:105434200-105446000	Weak transcription	Brain Angular Gyrus	brain
7	chr7:105435800-105445400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr7:105435800-105446600	Weak transcription	Primary monocytes fromperipheralblood	blood
9	chr7:105435800-105447200	Weak transcription	Primary hematopoietic stem cells	blood
10	chr7:105436200-105446600	Weak transcription	Monocytes-CD14+_RO01746	blood
11	chr7:105436800-105447200	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr7:105437600-105445800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr7:105438000-105446400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr7:105439000-105445400	Weak transcription	Pancreas	Pancrea
15	chr7:105439000-105446800	Weak transcription	Spleen	Spleen
16	chr7:105439800-105445200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr7:105439800-105447600	Enhancers	Colon Smooth Muscle	Colon
18	chr7:105440000-105446000	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr7:105440200-105445800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
20	chr7:105440200-105446000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr7:105440200-105446000	Weak transcription	Lung	lung
22	chr7:105440400-105445600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr7:105440400-105446200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr7:105441000-105445600	Weak transcription	Right Atrium	heart
25	chr7:105441000-105446000	Weak transcription	Skeletal Muscle Male	skeletal muscle
26	chr7:105441000-105447000	Weak transcription	Right Ventricle	heart
27	chr7:105441000-105448200	Weak transcription	Left Ventricle	heart
28	chr7:105441200-105445600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
29	chr7:105441200-105445600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr7:105441200-105445600	Weak transcription	Fetal Muscle Leg	muscle
31	chr7:105441200-105445600	Weak transcription	Fetal Thymus	thymus
32	chr7:105441200-105445600	Weak transcription	HSMM	muscle
33	chr7:105441200-105446400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr7:105441200-105446400	Weak transcription	Skeletal Muscle Female	skeletal muscle
35	chr7:105441200-105457200	Weak transcription	Fetal Lung	lung
36	chr7:105441400-105445600	Weak transcription	Muscle Satellite Cultured Cells	--
37	chr7:105441400-105445600	Weak transcription	Fetal Stomach	stomach
38	chr7:105441400-105446000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
39	chr7:105441400-105446000	Weak transcription	NHDF-Ad	bronchial
40	chr7:105441400-105446400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
41	chr7:105441400-105446600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
42	chr7:105441400-105446800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
43	chr7:105441400-105446800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
44	chr7:105441400-105447000	Weak transcription	Primary T cells from cord blood	blood
45	chr7:105441400-105449800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr7:105441600-105446000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
47	chr7:105441600-105446200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
48	chr7:105441600-105446600	Weak transcription	Primary T helper cells fromperipheralblood	blood
49	chr7:105441600-105446800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
50	chr7:105441600-105447000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood

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