Variant report

Variant	rs7786677
Chromosome Location	chr7:147364958-147364959
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs1525254	0.93[EUR][1000 genomes]
rs17170638	1.00[CHB][hapmap]
rs17170640	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs17327726	1.00[CEU][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2190915	1.00[CHB][hapmap]
rs2373175	1.00[CHB][hapmap]
rs2373176	1.00[CHB][hapmap]
rs2888515	1.00[CHB][hapmap]
rs4310123	1.00[CHB][hapmap]
rs4310124	0.98[EUR][1000 genomes]
rs4379380	1.00[CHB][hapmap]
rs4383899	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4383900	1.00[CHB][hapmap]
rs4436047	1.00[CHB][hapmap]
rs4455752	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4520083	1.00[CHB][hapmap]
rs56339188	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs58044035	0.98[EUR][1000 genomes]
rs60448751	0.98[EUR][1000 genomes]
rs6948030	1.00[CEU][hapmap]
rs6964327	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs6964959	1.00[CHB][hapmap]
rs6970360	1.00[CHB][hapmap]
rs731565	1.00[CHB][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73741217	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73741883	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7457657	1.00[CHB][hapmap]
rs758259	1.00[CHB][hapmap]
rs7779787	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7799323	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7803219	1.00[CHB][hapmap]
rs851726	1.00[CHB][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs851727	1.00[CHB][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs851734	1.00[CHB][hapmap]
rs971439	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs971440	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931005	chr7:146730472-147381257	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links