Variant report

Variant	rs7787558
Chromosome Location	chr7:104744475-104744476
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SRPK2-7	chr7:104743285-104745930	ENSG00000272918.1

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10231782	0.92[ASN][1000 genomes]
rs10241374	0.81[ASN][1000 genomes]
rs10244764	0.85[ASN][1000 genomes]
rs10245589	0.82[AFR][1000 genomes]
rs10245676	0.81[ASN][1000 genomes]
rs10249965	0.84[ASN][1000 genomes]
rs10269027	0.85[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs10279486	0.84[ASN][1000 genomes]
rs10279602	0.81[ASN][1000 genomes]
rs10280470	0.81[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs10808140	0.96[ASN][1000 genomes]
rs10953466	0.83[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs1143	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11520996	0.84[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs11973516	0.92[ASN][1000 genomes]
rs11976329	0.94[AFR][1000 genomes]
rs12534140	0.88[ASN][1000 genomes]
rs12540007	0.93[AFR][1000 genomes]
rs12667625	0.94[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs12671368	0.85[AFR][1000 genomes]
rs12705299	0.84[AFR][1000 genomes]
rs13245298	0.92[ASN][1000 genomes]
rs2237602	0.81[AFR][1000 genomes]
rs2237604	0.90[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs2237605	0.90[AFR][1000 genomes]
rs2237607	0.81[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs2237609	0.81[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs2240455	0.85[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs2240457	0.89[AFR][1000 genomes]
rs2240465	0.82[AFR][1000 genomes]
rs2299297	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2299299	0.91[AFR][1000 genomes]
rs28434158	0.87[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs3213676	0.92[AFR][1000 genomes]
rs4730067	0.82[ASN][1000 genomes]
rs4730068	0.92[ASN][1000 genomes]
rs4730071	0.84[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs6466046	0.86[AFR][1000 genomes]
rs6944847	0.91[ASN][1000 genomes]
rs6952534	0.85[AFR][1000 genomes]
rs6973052	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs757958	0.90[ASN][1000 genomes]
rs7785197	0.92[ASN][1000 genomes]
rs7800233	0.81[ASN][1000 genomes]
rs7810119	0.85[AFR][1000 genomes]
rs875567	0.84[ASN][1000 genomes]
rs875568	0.84[ASN][1000 genomes]
rs960437	0.84[ASN][1000 genomes]
rs9641341	0.88[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs999895	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888927	chr7:104614664-104781644	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	132 gene(s)	inside rSNPs	diseases
2	nsv608068	chr7:104622402-104757483	Weak transcription Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	132 gene(s)	inside rSNPs	diseases
3	esv34588	chr7:104737612-105153242	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:104677800-104758200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr7:104678000-104812200	Strong transcription	Dnd41	blood
3	chr7:104681200-104758400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr7:104681200-104760400	Strong transcription	Monocytes-CD14+_RO01746	blood
5	chr7:104685600-104759000	Strong transcription	Primary B cells from peripheral blood	blood
6	chr7:104701400-104758800	Strong transcription	Rectal Mucosa Donor 29	rectum
7	chr7:104702200-104747800	Weak transcription	Stomach Mucosa	stomach
8	chr7:104702800-104758800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr7:104703600-104759000	Strong transcription	Fetal Intestine Large	intestine
10	chr7:104704000-104745200	Weak transcription	Psoas Muscle	Psoas
11	chr7:104706000-104760200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr7:104712400-104758800	Strong transcription	Primary T helper cells fromperipheralblood	blood
13	chr7:104718200-104750600	Weak transcription	Fetal Brain Male	brain
14	chr7:104720600-104746200	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr7:104721400-104744600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr7:104721600-104744800	Weak transcription	Spleen	Spleen
17	chr7:104721600-104749400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr7:104722200-104759400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
19	chr7:104724200-104748000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr7:104726400-104744600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr7:104726800-104744800	Weak transcription	Gastric	stomach
22	chr7:104726800-104747800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
23	chr7:104727800-104758200	Strong transcription	Fetal Thymus	thymus
24	chr7:104727800-104759200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
25	chr7:104727800-104759800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
26	chr7:104727800-104760400	Strong transcription	Primary neutrophils fromperipheralblood	blood
27	chr7:104728000-104760200	Strong transcription	Rectal Mucosa Donor 31	rectum
28	chr7:104728200-104758400	Strong transcription	HUES64 Cell Line	embryonic stem cell
29	chr7:104728200-104758400	Strong transcription	Primary monocytes fromperipheralblood	blood
30	chr7:104728400-104756800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr7:104728400-104758400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
32	chr7:104728400-104758400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr7:104728600-104756000	Strong transcription	Fetal Muscle Trunk	muscle
34	chr7:104729600-104744800	Weak transcription	NHEK	skin
35	chr7:104732800-104744600	Weak transcription	Ovary	ovary
36	chr7:104733600-104744600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr7:104733600-104744600	Weak transcription	Thymus	Thymus
38	chr7:104733800-104747600	Weak transcription	Esophagus	oesophagus
39	chr7:104734800-104755200	Strong transcription	Cortex derived primary cultured neurospheres	brain
40	chr7:104735000-104749400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
41	chr7:104737000-104756000	Strong transcription	Duodenum Mucosa	Duodenum
42	chr7:104737000-104757800	Strong transcription	Adipose Nuclei	Adipose
43	chr7:104737600-104744800	Weak transcription	HSMMtube	muscle
44	chr7:104737800-104745200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
45	chr7:104737800-104758800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
46	chr7:104738600-104758400	Strong transcription	Fetal Lung	lung
47	chr7:104738800-104760200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr7:104739000-104744800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
49	chr7:104739000-104759200	Strong transcription	Primary T cells fromperipheralblood	blood
50	chr7:104739400-104745000	Weak transcription	Placenta Amnion	Placenta Amnion

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