Variant report

Variant	rs7788596
Chromosome Location	chr7:101839486-101839487
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr7:101839410-101839665	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:101838797..101841089-chr7:101845064..101846841,2	MCF-7	breast:
2	chr7:101832204..101836272-chr7:101837691..101841173,4	K562	blood:

Variant related genes	Relation type
ENSG00000252824	TF binding region

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10270614	0.82[CEU][hapmap]
rs1108056	0.89[CEU][hapmap]
rs11760331	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11772514	0.86[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs12537077	0.88[CEU][hapmap]
rs12538988	0.96[ASN][1000 genomes]
rs367356	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs378011	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs405789	0.81[ASN][1000 genomes]
rs420437	0.87[ASN][1000 genomes]
rs55961409	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6976947	0.89[CEU][hapmap]
rs7801220	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[YRI][hapmap];0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7801259	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7805317	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:101797800-101852200	Weak transcription	NHEK	skin
2	chr7:101800400-101850000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chr7:101800600-101851800	Strong transcription	Fetal Intestine Small	intestine
4	chr7:101801200-101864000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr7:101805400-101862200	Strong transcription	Primary neutrophils fromperipheralblood	blood
6	chr7:101808200-101840200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr7:101808400-101868400	Strong transcription	Thymus	Thymus
8	chr7:101812400-101860800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
9	chr7:101812600-101863200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr7:101812600-101867000	Strong transcription	Primary monocytes fromperipheralblood	blood
11	chr7:101812600-101867000	Strong transcription	Monocytes-CD14+_RO01746	blood
12	chr7:101813200-101852000	Weak transcription	NHDF-Ad	bronchial
13	chr7:101813800-101860800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr7:101814000-101863600	Weak transcription	HUVEC	blood vessel
15	chr7:101814200-101858600	Weak transcription	Right Atrium	heart
16	chr7:101814400-101840200	Weak transcription	NH-A	brain
17	chr7:101814600-101840200	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr7:101816000-101859800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
19	chr7:101817200-101851200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
20	chr7:101820600-101860200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
21	chr7:101821200-101857200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
22	chr7:101823400-101853800	Weak transcription	Fetal Kidney	kidney
23	chr7:101824400-101851200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
24	chr7:101824400-101863400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr7:101827600-101845400	Weak transcription	Stomach Mucosa	stomach
26	chr7:101829400-101870800	Weak transcription	Small Intestine	intestine
27	chr7:101829600-101848800	Weak transcription	Brain Angular Gyrus	brain
28	chr7:101831400-101845400	Strong transcription	Liver	Liver
29	chr7:101831600-101850200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr7:101831600-101851000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
31	chr7:101831600-101855800	Strong transcription	Left Ventricle	heart
32	chr7:101831800-101842600	Strong transcription	Gastric	stomach
33	chr7:101831800-101852200	Strong transcription	Lung	lung
34	chr7:101832000-101843600	Weak transcription	HMEC	breast
35	chr7:101832200-101846000	Strong transcription	Adipose Nuclei	Adipose
36	chr7:101832200-101850400	Strong transcription	Primary B cells from peripheral blood	blood
37	chr7:101832200-101858200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
38	chr7:101832200-101859200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr7:101832200-101859400	Strong transcription	Fetal Thymus	thymus
40	chr7:101832200-101863200	Strong transcription	Dnd41	blood
41	chr7:101832400-101853800	Strong transcription	Fetal Muscle Leg	muscle
42	chr7:101832400-101856600	Strong transcription	Stomach Smooth Muscle	stomach
43	chr7:101832400-101864000	Strong transcription	Fetal Stomach	stomach
44	chr7:101832600-101857800	Weak transcription	Fetal Heart	heart
45	chr7:101832600-101860200	Strong transcription	Duodenum Mucosa	Duodenum
46	chr7:101832800-101841400	Strong transcription	Esophagus	oesophagus
47	chr7:101832800-101842400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr7:101832800-101850600	Strong transcription	Rectal Mucosa Donor 29	rectum
49	chr7:101832800-101852400	Weak transcription	Pancreatic Islets	Pancreatic Islet
50	chr7:101832800-101864800	Strong transcription	Primary T cells from cord blood	blood

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