Variant report

Variant	rs7790288
Chromosome Location	chr7:48650130-48650131
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10268266	0.83[AMR][1000 genomes]
rs11977294	0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1358409	0.83[AMR][1000 genomes]
rs4917024	0.82[AMR][1000 genomes]
rs6955686	0.92[ASN][1000 genomes]
rs7811654	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830992	chr7:48497408-48686442	Weak transcription ZNF genes & repeats Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
2	nsv888008	chr7:48568425-48652224	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:48635800-48672200	Weak transcription	Primary hematopoietic stem cells	blood
2	chr7:48648800-48651400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
3	chr7:48649400-48652200	Strong transcription	Primary neutrophils fromperipheralblood	blood
4	chr7:48650000-48650200	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr7:48650000-48650800	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr7:48650000-48651200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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