Variant report

Variant	rs7790915
Chromosome Location	chr7:6742374-6742375
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr7:6741677-6742960	HepG2	liver:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr7:6741635..6743185-chr7:6744892..6746414,2	MCF-7	breast:
2	chr7:6727828..6730097-chr7:6741325..6744372,3	MCF-7	breast:
3	chr7:6736883..6740896-chr7:6741673..6744991,4	MCF-7	breast:
4	chr7:6723810..6726047-chr7:6741639..6744334,2	K562	blood:

Variant related genes	Relation type
ZNF12	TF binding region
ENSG00000164631	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034060	chr7:5814823-6745710	Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	138 gene(s)	inside rSNPs	diseases
2	nsv538711	chr7:5814823-6745710	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	138 gene(s)	inside rSNPs	diseases
3	nsv949531	chr7:5949371-6753694	Strong transcription Bivalent Enhancer Bivalent/Poised TSS Enhancers Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	129 gene(s)	inside rSNPs	diseases
4	nsv1015277	chr7:6705439-7303195	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
5	nsv887439	chr7:6736332-6791749	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
6	nsv1015646	chr7:6738483-6779270	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
7	esv3343175	chr7:6741252-6743800	Strong transcription ZNF genes & repeats Genic enhancers Weak transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	esv3443834	chr7:6741452-6743575	Genic enhancers Strong transcription ZNF genes & repeats Weak transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	esv3322751	chr7:6741888-6742701	Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	esv7643	chr7:6741947-6742799	Genic enhancers ZNF genes & repeats Weak transcription Strong transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	esv3423216	chr7:6742002-6742576	ZNF genes & repeats Weak transcription Genic enhancers Strong transcription Enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
12	esv3434993	chr7:6742054-6742633	ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
13	esv4389	chr7:6742103-6742638	Genic enhancers Strong transcription ZNF genes & repeats Weak transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
14	esv3496982	chr7:6742141-6742611	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
15	esv3496983	chr7:6742141-6742611	ZNF genes & repeats Transcr. at gene 5' and 3' Weak transcription Genic enhancers Strong transcription Flanking Active TSS Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
16	esv3405280	chr7:6742144-6742672	Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:6712400-6744000	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr7:6718600-6742600	ZNF genes & repeats	Liver	Liver
3	chr7:6721400-6745200	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
4	chr7:6721600-6743800	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
5	chr7:6721600-6744600	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr7:6721600-6745400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr7:6721800-6744000	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr7:6722400-6745000	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
9	chr7:6722600-6745000	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr7:6723600-6745000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr7:6723600-6745400	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr7:6723800-6745000	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr7:6724000-6744800	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr7:6725000-6744800	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr7:6725800-6745000	ZNF genes & repeats	NH-A	brain
16	chr7:6726000-6743600	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
17	chr7:6726000-6744800	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
18	chr7:6726000-6745000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr7:6726000-6745000	ZNF genes & repeats	Fetal Muscle Leg	muscle
20	chr7:6726000-6745200	ZNF genes & repeats	A549	lung
21	chr7:6726200-6743600	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr7:6726200-6743600	ZNF genes & repeats	NHEK	skin
23	chr7:6726200-6743800	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr7:6726200-6743800	ZNF genes & repeats	HMEC	breast
25	chr7:6726200-6745000	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
26	chr7:6726200-6745000	ZNF genes & repeats	Primary hematopoietic stem cells	blood
27	chr7:6726200-6745000	ZNF genes & repeats	Fetal Lung	lung
28	chr7:6726400-6743600	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
29	chr7:6726400-6744800	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
30	chr7:6726600-6745000	ZNF genes & repeats	GM12878-XiMat	blood
31	chr7:6730400-6744000	ZNF genes & repeats	Colonic Mucosa	Colon
32	chr7:6730800-6745000	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr7:6731200-6745400	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
34	chr7:6732600-6744000	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood
35	chr7:6733200-6745200	ZNF genes & repeats	Fetal Intestine Small	intestine
36	chr7:6733600-6744800	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr7:6736200-6743600	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
38	chr7:6737000-6742800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
39	chr7:6737000-6744000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
40	chr7:6737600-6742600	Strong transcription	Stomach Smooth Muscle	stomach
41	chr7:6738000-6744800	Strong transcription	Fetal Thymus	thymus
42	chr7:6738200-6742800	Weak transcription	Stomach Mucosa	stomach
43	chr7:6738800-6743600	ZNF genes & repeats	Hela-S3	cervix
44	chr7:6738800-6744800	ZNF genes & repeats	Fetal Stomach	stomach
45	chr7:6739400-6742600	Strong transcription	Rectal Mucosa Donor 31	rectum
46	chr7:6739400-6742800	Strong transcription	Fetal Muscle Trunk	muscle
47	chr7:6739400-6745600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
48	chr7:6739600-6745400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
49	chr7:6739800-6743200	Strong transcription	HUVEC	blood vessel
50	chr7:6740200-6743000	Strong transcription	Primary neutrophils fromperipheralblood	blood

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