Variant report

Variant	rs7791430
Chromosome Location	chr7:124429953-124429954
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:124429585..124431112-chr7:124569915..124572046,2	K562	blood:
2	chr7:124429383..124430948-chr7:124434536..124436623,2	K562	blood:

Variant related genes	Relation type
ENSG00000128513	Chromatin interaction
ENSG00000224897	Chromatin interaction

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:71)

rs_ID	r²[population]
rs10224463	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10225552	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10226033	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10228201	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10230610	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10233385	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10233596	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10240673	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10241173	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10244817	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10246424	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10249722	0.90[ASN][1000 genomes]
rs10253613	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10264060	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10265763	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10271646	0.91[ASN][1000 genomes]
rs10281582	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10464529	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12111865	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1541416	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1541418	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17246404	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2107939	0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2239532	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2286175	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2402751	0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2402752	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28523990	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28622327	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28638102	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28728448	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28844358	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34986416	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs36045816	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3925331	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4473974	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4532534	0.90[ASN][1000 genomes]
rs55964341	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56313563	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56321835	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56356267	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56387611	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs59294613	0.91[ASN][1000 genomes]
rs59670428	0.91[ASN][1000 genomes]
rs66492217	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs66513837	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs66526112	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs66665074	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs66922607	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs67084428	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs67146030	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs67552763	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs67585224	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs67939974	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs68007199	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs68091803	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6943653	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6952721	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6971909	0.91[ASN][1000 genomes]
rs720613	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs720614	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs722560	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs727505	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7777947	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7790856	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7795943	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7801661	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7806680	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9655845	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs988699	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs989177	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429809	chr7:123937674-124835925	Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	49 gene(s)	inside rSNPs	diseases
2	esv3446198	chr7:124358002-124586856	Flanking Bivalent TSS/Enh Strong transcription Weak transcription Bivalent/Poised TSS Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:124422600-124430800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr7:124427400-124430600	Weak transcription	Placenta	Placenta
3	chr7:124428400-124431800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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