Variant report

Variant	rs7792471
Chromosome Location	chr7:105463471-105463472
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:105463470..105465747-chr7:105472963..105475389,2	K562	blood:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10229491	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2108324	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs212412	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs212413	0.93[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs212414	1.00[CHB][hapmap]
rs4727628	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs740307	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs740309	1.00[CHB][hapmap];0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7781203	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs886797	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027213	chr7:105438610-106022869	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:105430200-105479200	Weak transcription	Aorta	Aorta
2	chr7:105446400-105471200	Weak transcription	Lung	lung
3	chr7:105446800-105470000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr7:105446800-105470200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr7:105446800-105471200	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr7:105447000-105470000	Weak transcription	Ovary	ovary
7	chr7:105447200-105470200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr7:105447600-105470000	Weak transcription	NH-A	brain
9	chr7:105447800-105470600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr7:105448600-105465000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr7:105448800-105470400	Weak transcription	Fetal Muscle Leg	muscle
12	chr7:105449000-105479200	Weak transcription	Esophagus	oesophagus
13	chr7:105450200-105466400	Weak transcription	NHLF	lung
14	chr7:105450400-105470200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr7:105450800-105470200	Weak transcription	NHEK	skin
16	chr7:105452400-105464600	Weak transcription	Fetal Intestine Large	intestine
17	chr7:105452400-105467400	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr7:105452400-105471200	Weak transcription	Duodenum Mucosa	Duodenum
19	chr7:105452600-105470800	Weak transcription	Small Intestine	intestine
20	chr7:105452600-105471200	Weak transcription	Right Ventricle	heart
21	chr7:105452800-105465800	Weak transcription	Liver	Liver
22	chr7:105452800-105470400	Weak transcription	Rectal Mucosa Donor 29	rectum
23	chr7:105456200-105470200	Weak transcription	H1 Cell Line	embryonic stem cell
24	chr7:105456600-105467400	Weak transcription	HUVEC	blood vessel
25	chr7:105456600-105470000	Weak transcription	HUES6 Cell Line	embryonic stem cell
26	chr7:105456800-105467200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr7:105457200-105463800	Weak transcription	Rectal Smooth Muscle	rectum
28	chr7:105457200-105478000	Weak transcription	Brain Anterior Caudate	brain
29	chr7:105457400-105468600	Weak transcription	Spleen	Spleen
30	chr7:105457400-105469800	Weak transcription	Stomach Smooth Muscle	stomach
31	chr7:105457400-105470000	Weak transcription	HUES64 Cell Line	embryonic stem cell
32	chr7:105457600-105465600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr7:105457800-105466200	Weak transcription	Colon Smooth Muscle	Colon
34	chr7:105457800-105469200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr7:105457800-105470000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
36	chr7:105458000-105470000	Weak transcription	HUES48 Cell Line	embryonic stem cell
37	chr7:105458200-105465800	Weak transcription	Primary monocytes fromperipheralblood	blood
38	chr7:105458200-105466400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr7:105458200-105468600	Weak transcription	Fetal Lung	lung
40	chr7:105459200-105470600	Weak transcription	Cortex derived primary cultured neurospheres	brain
41	chr7:105459200-105473200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
42	chr7:105460200-105471000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr7:105460600-105464400	Weak transcription	Placenta	Placenta
44	chr7:105461000-105471200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
45	chr7:105461200-105466200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr7:105461400-105465600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr7:105461400-105465800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr7:105461400-105468400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
49	chr7:105461400-105469800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
50	chr7:105461600-105465200	Weak transcription	Fetal Intestine Small	intestine

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