Variant report

Variant	rs7792708
Chromosome Location	chr7:47940331-47940332
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs13246713	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28733677	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34439423	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35389440	0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35588446	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6945000	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6945365	0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7791003	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs939906	0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026223	chr7:47560728-48243287	Genic enhancers Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv869585	chr7:47765428-48151324	Flanking Active TSS Enhancers Strong transcription Bivalent/Poised TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv830991	chr7:47854530-48025996	Weak transcription Active TSS Genic enhancers Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv532120	chr7:47882757-48195869	Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
5	nsv470221	chr7:47917495-48354363	Strong transcription Flanking Active TSS Enhancers Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
6	nsv464442	chr7:47917495-48354820	Genic enhancers Flanking Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
7	nsv606893	chr7:47917495-48354820	Flanking Active TSS Strong transcription Genic enhancers Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:47903400-47945000	Weak transcription	Brain Angular Gyrus	brain
2	chr7:47916400-47949000	Weak transcription	Right Ventricle	heart
3	chr7:47925600-47946800	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr7:47927400-47945000	Weak transcription	Brain Anterior Caudate	brain
5	chr7:47928200-47945000	Weak transcription	Brain Cingulate Gyrus	brain
6	chr7:47928400-47957600	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr7:47929600-47941000	Weak transcription	HSMMtube	muscle
8	chr7:47929600-47947000	Weak transcription	Left Ventricle	heart
9	chr7:47930400-47945600	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr7:47934000-48001800	Weak transcription	Psoas Muscle	Psoas
11	chr7:47935000-47941000	Weak transcription	Adipose Nuclei	Adipose
12	chr7:47937000-47944000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr7:47937000-47944400	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr7:47937200-47941200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr7:47937400-47941200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr7:47937400-47941200	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr7:47937400-47941200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr7:47937800-47941000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr7:47937800-47941000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr7:47937800-47941000	Weak transcription	HUES6 Cell Line	embryonic stem cell
21	chr7:47937800-47944600	Weak transcription	HUES48 Cell Line	embryonic stem cell
22	chr7:47937800-47945000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr7:47937800-47945000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr7:47938000-47944400	Weak transcription	HUES64 Cell Line	embryonic stem cell
25	chr7:47939200-47943800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
26	chr7:47940000-47942800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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