Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10487470	1.00[JPT][hapmap]
rs17644601	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17862293	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs17862309	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17863210	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17863212	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17863237	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17864127	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17864156	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17866036	0.85[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];0.92[MEX][hapmap];0.91[MKK][hapmap];0.96[TSI][hapmap];0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17866348	1.00[JPT][hapmap]
rs17867759	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17867764	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs17867770	1.00[JPT][hapmap]
rs17867775	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17869212	1.00[JPT][hapmap]
rs17869630	1.00[JPT][hapmap]
rs1894730	0.87[CEU][hapmap];1.00[CHB][hapmap]
rs2023641	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2237793	1.00[JPT][hapmap]
rs6467111	0.85[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.93[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831121	chr7:126593363-126774413	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv889189	chr7:126699088-126963028	Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv2761367	chr7:126717157-126865324	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs7794734	MED26	trans	cerebellum	SCAN
rs7794734	IQUB	cis	cerebellum	SCAN
rs7794734	KLHDC10	cis	parietal	SCAN
rs7794734	CADPS2	cis	cerebellum	SCAN
rs7794734	SLC13A1	cis	cerebellum	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:126735200-126742400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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