Variant report

Variant	rs7796818
Chromosome Location	chr7:101581878-101581879
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:101460014..101461798-chr7:101579155..101581945,2	MCF-7	breast:
2	chr7:101574113..101579725-chr7:101580632..101589310,14	MCF-7	breast:
3	chr7:101577286..101579411-chr7:101581063..101582726,2	K562	blood:
4	chr7:101580274..101583226-chr7:101583511..101585560,4	MCF-7	breast:
5	chr7:101554382..101556899-chr7:101581254..101583900,2	K562	blood:

Variant related genes	Relation type
ENSG00000257923	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10231075	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10236615	1.00[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs10238938	0.82[ASN][1000 genomes]
rs10254769	0.82[ASN][1000 genomes]
rs10259603	1.00[JPT][hapmap]
rs10267777	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10276057	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10441233	0.85[YRI][hapmap]
rs10488042	1.00[JPT][hapmap]
rs10488043	1.00[JPT][hapmap]
rs12533258	1.00[ASN][1000 genomes]
rs12537526	1.00[JPT][hapmap]
rs1541437	0.83[YRI][hapmap]
rs17408612	1.00[JPT][hapmap]
rs17408640	1.00[JPT][hapmap]
rs17487076	1.00[JPT][hapmap]
rs17487672	1.00[JPT][hapmap]
rs202142	1.00[JPT][hapmap]
rs202147	1.00[JPT][hapmap]
rs202150	1.00[JPT][hapmap]
rs202152	1.00[JPT][hapmap]
rs2031085	1.00[CHB][hapmap];0.83[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2041008	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6465838	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6465839	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs6973312	1.00[JPT][hapmap]
rs7780631	1.00[JPT][hapmap]
rs7785266	0.87[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.84[LWK][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7791278	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7796995	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7805379	1.00[JPT][hapmap]
rs7810922	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];0.90[MKK][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs9969318	1.00[CHB][hapmap];1.00[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.85[AMR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024319	chr7:101368299-101668159	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv539047	chr7:101368299-101668159	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
3	nsv1020372	chr7:101420819-101718950	Enhancers Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
4	nsv482846	chr7:101539981-101707666	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv888827	chr7:101562674-101650302	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:99 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:101561200-101584000	Weak transcription	Hela-S3	cervix
2	chr7:101562000-101583600	Weak transcription	Primary T cells fromperipheralblood	blood
3	chr7:101567000-101596000	Weak transcription	Primary monocytes fromperipheralblood	blood
4	chr7:101570200-101597000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr7:101571600-101587400	Weak transcription	Primary neutrophils fromperipheralblood	blood
6	chr7:101575800-101587400	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr7:101577200-101584000	Weak transcription	Primary hematopoietic stem cells	blood
8	chr7:101577600-101583600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr7:101577600-101595600	Weak transcription	Primary T cells from cord blood	blood
10	chr7:101578000-101583600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr7:101578200-101612000	Weak transcription	HepG2	liver
12	chr7:101578200-101671200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr7:101579400-101586000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
14	chr7:101579600-101582400	Weak transcription	Primary B cells from cord blood	blood
15	chr7:101579600-101583600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr7:101579600-101584000	Weak transcription	Pancreas	Pancrea
17	chr7:101579600-101584000	Weak transcription	Thymus	Thymus
18	chr7:101579800-101584600	Enhancers	GM12878-XiMat	blood
19	chr7:101580000-101582400	Weak transcription	Primary B cells from peripheral blood	blood
20	chr7:101580200-101584600	Weak transcription	Pancreatic Islets	Pancreatic Islet
21	chr7:101580400-101583600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr7:101580400-101584000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr7:101580400-101584000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr7:101580400-101584000	Weak transcription	Fetal Kidney	kidney
25	chr7:101580400-101584000	Weak transcription	Gastric	stomach
26	chr7:101580400-101584000	Weak transcription	K562	blood
27	chr7:101580400-101584000	Weak transcription	NHEK	skin
28	chr7:101580400-101584400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr7:101580400-101585200	Weak transcription	HUVEC	blood vessel
30	chr7:101580400-101585600	Weak transcription	Small Intestine	intestine
31	chr7:101580400-101587600	Weak transcription	Spleen	Spleen
32	chr7:101580600-101582000	Enhancers	Skeletal Muscle Male	skeletal muscle
33	chr7:101580600-101582400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr7:101580600-101583400	Weak transcription	Fetal Thymus	thymus
35	chr7:101580600-101583600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr7:101580600-101583600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
37	chr7:101580600-101583600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr7:101580600-101583600	Weak transcription	Psoas Muscle	Psoas
39	chr7:101580600-101583600	Weak transcription	Sigmoid Colon	Sigmoid Colon
40	chr7:101580600-101583800	Weak transcription	A549	lung
41	chr7:101580600-101584000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr7:101580600-101584000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
43	chr7:101580600-101584000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
44	chr7:101580600-101584000	Weak transcription	Duodenum Mucosa	Duodenum
45	chr7:101580600-101584000	Weak transcription	Esophagus	oesophagus
46	chr7:101580600-101584200	Weak transcription	Aorta	Aorta
47	chr7:101580600-101584200	Weak transcription	Ovary	ovary
48	chr7:101580600-101584400	Weak transcription	Brain Angular Gyrus	brain
49	chr7:101580600-101584400	Weak transcription	HSMMtube	muscle
50	chr7:101580600-101584600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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