Variant report

Variant	rs7798358
Chromosome Location	chr7:101788475-101788476
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:101783854..101785897-chr7:101787685..101790178,2	K562	blood:
2	chr7:101650955..101653343-chr7:101787745..101790282,2	MCF-7	breast:

Extended variants
information (count: 55 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10215830	1.00[LWK][hapmap];0.82[MKK][hapmap]
rs10231704	1.00[CHB][hapmap]
rs10243429	0.84[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10245459	1.00[CHB][hapmap]
rs10246310	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs10249739	1.00[CHB][hapmap]
rs10252737	1.00[CHB][hapmap]
rs10259603	1.00[CHB][hapmap]
rs10259857	0.95[CEU][hapmap];0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10261132	1.00[CHB][hapmap]
rs10271376	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[YRI][hapmap];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10271680	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10277680	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10953357	1.00[CHB][hapmap]
rs11769397	1.00[CHB][hapmap]
rs11975153	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11975663	1.00[CHB][hapmap]
rs12537526	1.00[CHB][hapmap]
rs12538286	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.82[GIH][hapmap];1.00[LWK][hapmap];0.95[MEX][hapmap];0.92[TSI][hapmap];0.85[YRI][hapmap];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12538988	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12539349	1.00[CHB][hapmap]
rs12539846	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1734886	0.87[ASN][1000 genomes]
rs17408612	1.00[CHB][hapmap]
rs17408640	1.00[CHB][hapmap]
rs17409879	1.00[CHB][hapmap]
rs17410356	1.00[CHB][hapmap]
rs17487076	1.00[CHB][hapmap]
rs17487672	1.00[CHB][hapmap]
rs17495148	1.00[CHB][hapmap]
rs17496657	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17498402	0.80[EUR][1000 genomes]
rs201448	1.00[CHD][hapmap]
rs2268030	0.81[EUR][1000 genomes]
rs28401723	1.00[ASN][1000 genomes]
rs28603325	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs382934	0.84[CEU][hapmap]
rs55851631	0.80[ASN][1000 genomes]
rs59220714	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6465843	1.00[CHB][hapmap]
rs6465850	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67245174	0.86[ASN][1000 genomes]
rs6959475	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6973312	1.00[CHB][hapmap]
rs73187803	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73187816	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73187849	0.80[EUR][1000 genomes]
rs73187850	0.80[EUR][1000 genomes]
rs7776498	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[GIH][hapmap];0.91[LWK][hapmap];0.95[MEX][hapmap];0.85[YRI][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7780631	1.00[CHB][hapmap]
rs7797764	1.00[CHB][hapmap]
rs7801220	0.85[CEU][hapmap]
rs7805379	1.00[CHB][hapmap]
rs7807344	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9655774	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7798358	SH2B2	cis	cerebellum	SCAN

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:101760200-101796000	Weak transcription	Rectal Smooth Muscle	rectum
2	chr7:101760400-101788600	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr7:101760400-101789400	Weak transcription	Right Ventricle	heart
4	chr7:101760400-101795800	Weak transcription	Left Ventricle	heart
5	chr7:101761000-101795600	Weak transcription	Colon Smooth Muscle	Colon
6	chr7:101763600-101790400	Weak transcription	Brain Anterior Caudate	brain
7	chr7:101765200-101788600	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr7:101765200-101801200	Weak transcription	Pancreas	Pancrea
9	chr7:101765600-101801000	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr7:101766000-101796000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr7:101766000-101796000	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr7:101766000-101796000	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr7:101766200-101793800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr7:101766200-101796000	Weak transcription	Esophagus	oesophagus
15	chr7:101766200-101796600	Weak transcription	Brain Germinal Matrix	brain
16	chr7:101768000-101793800	Weak transcription	K562	blood
17	chr7:101768800-101790200	Weak transcription	Spleen	Spleen
18	chr7:101768800-101793800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr7:101768800-101795200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
20	chr7:101769000-101789600	Weak transcription	HSMM	muscle
21	chr7:101769000-101790000	Weak transcription	Ovary	ovary
22	chr7:101769000-101792400	Weak transcription	Gastric	stomach
23	chr7:101769000-101795000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
24	chr7:101769000-101795400	Weak transcription	HUES6 Cell Line	embryonic stem cell
25	chr7:101769000-101795800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
26	chr7:101769000-101795800	Weak transcription	Stomach Smooth Muscle	stomach
27	chr7:101771200-101795400	Weak transcription	HUES48 Cell Line	embryonic stem cell
28	chr7:101771400-101796600	Weak transcription	Sigmoid Colon	Sigmoid Colon
29	chr7:101772000-101795200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
30	chr7:101772000-101796800	Weak transcription	Liver	Liver
31	chr7:101772000-101801600	Weak transcription	Duodenum Mucosa	Duodenum
32	chr7:101773400-101795400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
33	chr7:101773600-101792800	Weak transcription	H1 Cell Line	embryonic stem cell
34	chr7:101773600-101795200	Weak transcription	HUES64 Cell Line	embryonic stem cell
35	chr7:101773600-101795800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
36	chr7:101773600-101801200	Weak transcription	Aorta	Aorta
37	chr7:101773800-101796000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr7:101774200-101801200	Weak transcription	Cortex derived primary cultured neurospheres	brain
39	chr7:101776200-101792000	Strong transcription	Fetal Intestine Small	intestine
40	chr7:101777400-101812800	Weak transcription	Fetal Lung	lung
41	chr7:101777600-101790400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr7:101777600-101795200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
43	chr7:101777800-101790600	Weak transcription	Osteobl	bone
44	chr7:101777800-101796600	Weak transcription	NHLF	lung
45	chr7:101778000-101793600	Weak transcription	NHEK	skin
46	chr7:101778200-101796600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr7:101778400-101790200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr7:101778400-101796000	Weak transcription	NH-A	brain
49	chr7:101778400-101812000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr7:101778600-101793000	Weak transcription	Hela-S3	cervix

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