Variant report

Variant	rs7801259
Chromosome Location	chr7:101801515-101801516
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:101797921..101799517-chr7:101801166..101802707,2	K562	blood:
2	chr7:101797931..101799467-chr7:101801104..101802765,2	MCF-7	breast:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10270614	0.82[CEU][hapmap]
rs1108056	0.89[CEU][hapmap]
rs11760331	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11772514	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12537077	0.88[CEU][hapmap]
rs12538988	0.96[ASN][1000 genomes]
rs367356	0.86[EUR][1000 genomes]
rs378011	0.86[EUR][1000 genomes]
rs405789	0.81[ASN][1000 genomes]
rs420437	0.87[ASN][1000 genomes]
rs55961409	0.86[EUR][1000 genomes]
rs6976947	0.89[CEU][hapmap]
rs7788596	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7801220	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7805317	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:101772000-101801600	Weak transcription	Duodenum Mucosa	Duodenum
2	chr7:101777400-101812800	Weak transcription	Fetal Lung	lung
3	chr7:101778400-101812000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr7:101782800-101803400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr7:101784800-101801600	Weak transcription	Adipose Nuclei	Adipose
6	chr7:101784800-101814400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
7	chr7:101784800-101821600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
8	chr7:101784800-101822600	Weak transcription	Primary T helper cells PMA-I stimulated	--
9	chr7:101789800-101812800	Weak transcription	Brain Angular Gyrus	brain
10	chr7:101790600-101811400	Weak transcription	Brain Substantia Nigra	brain
11	chr7:101790800-101806600	Weak transcription	Psoas Muscle	Psoas
12	chr7:101790800-101811800	Weak transcription	Osteobl	bone
13	chr7:101790800-101812600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr7:101791000-101801800	Weak transcription	Skeletal Muscle Female	skeletal muscle
15	chr7:101791000-101812000	Weak transcription	Brain Hippocampus Middle	brain
16	chr7:101793200-101806600	Weak transcription	Colonic Mucosa	Colon
17	chr7:101793800-101812600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr7:101794800-101816800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr7:101796000-101810800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
20	chr7:101796400-101802000	Weak transcription	Duodenum Smooth Muscle	Duodenum
21	chr7:101797000-101801600	Weak transcription	Stomach Smooth Muscle	stomach
22	chr7:101797000-101802000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr7:101797000-101806000	Weak transcription	Spleen	Spleen
24	chr7:101797000-101814200	Weak transcription	Hela-S3	cervix
25	chr7:101797200-101801600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr7:101797200-101801600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
27	chr7:101797200-101801600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
28	chr7:101797200-101801600	Weak transcription	Lung	lung
29	chr7:101797200-101801600	Weak transcription	Sigmoid Colon	Sigmoid Colon
30	chr7:101797200-101801800	Weak transcription	HUES48 Cell Line	embryonic stem cell
31	chr7:101797200-101801800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
32	chr7:101797200-101802000	Weak transcription	NH-A	brain
33	chr7:101797200-101803400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr7:101797200-101805200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
35	chr7:101797200-101806000	Weak transcription	Primary hematopoietic stem cells	blood
36	chr7:101797200-101806000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr7:101797200-101806200	Weak transcription	Rectal Mucosa Donor 31	rectum
38	chr7:101797200-101807200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
39	chr7:101797200-101807600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
40	chr7:101797200-101807600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr7:101797200-101808000	Weak transcription	NHLF	lung
42	chr7:101797200-101812000	Weak transcription	Muscle Satellite Cultured Cells	--
43	chr7:101797200-101812600	Weak transcription	Stomach Mucosa	stomach
44	chr7:101797200-101812800	Weak transcription	Brain Germinal Matrix	brain
45	chr7:101797200-101812800	Weak transcription	HSMM	muscle
46	chr7:101797200-101814000	Weak transcription	GM12878-XiMat	blood
47	chr7:101797200-101818400	Weak transcription	Colon Smooth Muscle	Colon
48	chr7:101797200-101818600	Weak transcription	Rectal Smooth Muscle	rectum
49	chr7:101797200-101821400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr7:101797200-101827800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links