Variant report

Variant	rs7801298
Chromosome Location	chr7:138294896-138294897
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11981647	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs60367633	0.81[AMR][1000 genomes]
rs60555372	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030956	chr7:138163169-138579519	Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Genic enhancers Enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:138287600-138303200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr7:138292600-138295200	Weak transcription	HepG2	liver
3	chr7:138293200-138298000	Weak transcription	Fetal Lung	lung
4	chr7:138293200-138298800	Weak transcription	Fetal Kidney	kidney
5	chr7:138293200-138308400	Weak transcription	Primary T cells from cord blood	blood
6	chr7:138293400-138295200	Weak transcription	Liver	Liver
7	chr7:138293600-138297400	Weak transcription	HSMMtube	muscle
8	chr7:138293800-138295200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr7:138294000-138295000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr7:138294000-138296200	Enhancers	Fetal Intestine Large	intestine
11	chr7:138294200-138295200	Weak transcription	Brain Germinal Matrix	brain
12	chr7:138294400-138295400	Weak transcription	Primary hematopoietic stem cells	blood
13	chr7:138294400-138295400	Weak transcription	Ovary	ovary
14	chr7:138294400-138295600	Weak transcription	Pancreas	Pancrea
15	chr7:138294600-138296400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
16	chr7:138294600-138296400	Enhancers	Fetal Intestine Small	intestine
17	chr7:138294800-138295800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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