Variant report

Variant	rs7801387
Chromosome Location	chr7:104307987-104307988
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10241057	1.00[CHB][hapmap];0.97[CHD][hapmap];0.92[JPT][hapmap];0.96[MEX][hapmap];0.81[TSI][hapmap]
rs10249877	0.87[CHB][hapmap];0.92[JPT][hapmap];0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10487221	0.83[MEX][hapmap];0.81[TSI][hapmap]
rs10487222	0.96[CEU][hapmap];0.92[MEX][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10953438	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10953439	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12537797	0.93[CHB][hapmap];0.83[JPT][hapmap]
rs4513902	1.00[CHB][hapmap];0.85[JPT][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6943307	1.00[CHB][hapmap];0.94[CHD][hapmap];0.85[JPT][hapmap];0.96[MEX][hapmap];0.81[TSI][hapmap]
rs7458699	1.00[CEU][hapmap]
rs7781331	1.00[CEU][hapmap];0.87[CHB][hapmap];0.89[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];1.00[TSI][hapmap]
rs7782065	1.00[CHB][hapmap];0.97[CHD][hapmap];0.85[JPT][hapmap];0.96[MEX][hapmap];0.81[TSI][hapmap]
rs995661	0.92[CEU][hapmap];0.83[GIH][hapmap];0.92[MEX][hapmap];1.00[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv970927	chr7:104307903-104312412	Inactive region	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs7801387	ATXN7L1	cis	parietal	SCAN
rs7801387	ATXN7L1	cis	cerebellum	SCAN
rs7801387	POP7	cis	cerebellum	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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