Variant report

Variant	rs7802150
Chromosome Location	chr7:48672453-48672454
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10256975	0.82[CEU][hapmap]
rs11185608	0.90[TSI][hapmap]
rs12113920	0.90[TSI][hapmap]
rs12538472	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1316821	0.81[TSI][hapmap]
rs1317162	0.90[TSI][hapmap]
rs17092931	0.90[TSI][hapmap]
rs17132335	0.81[TSI][hapmap]
rs17132388	0.81[TSI][hapmap]
rs17132511	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17132514	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17132520	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1918588	0.90[TSI][hapmap]
rs1918613	0.81[TSI][hapmap]
rs2141249	0.82[CEU][hapmap]
rs4072502	0.90[TSI][hapmap]
rs4072503	0.90[TSI][hapmap]
rs4144067	0.90[TSI][hapmap]
rs4517068	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs56328624	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs58043122	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs66481137	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs66727510	0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs67429470	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs67925221	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs6948549	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6976521	1.00[CEU][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7807488	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7807529	0.90[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830992	chr7:48497408-48686442	Weak transcription ZNF genes & repeats Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
2	nsv606894	chr7:48663637-48718598	ZNF genes & repeats Weak transcription Strong transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:48672200-48672600	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr7:48672200-48672600	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr7:48672200-48672600	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr7:48672200-48672600	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
5	chr7:48672200-48672600	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr7:48672200-48672600	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr7:48672200-48672600	ZNF genes & repeats	Primary neutrophils fromperipheralblood	blood
8	chr7:48672200-48672600	ZNF genes & repeats	Primary hematopoietic stem cells	blood
9	chr7:48672200-48672600	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
10	chr7:48672200-48672600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr7:48672200-48672600	Enhancers	Aorta	Aorta
12	chr7:48672200-48672600	Bivalent/Poised TSS	Brain Cingulate Gyrus	brain
13	chr7:48672200-48672600	ZNF genes & repeats	Brain Dorsolateral Prefrontal Cortex	brain
14	chr7:48672200-48672600	ZNF genes & repeats	Esophagus	oesophagus
15	chr7:48672200-48672600	ZNF genes & repeats	Fetal Heart	heart
16	chr7:48672200-48672600	Flanking Bivalent TSS/Enh	Gastric	stomach
17	chr7:48672200-48672600	ZNF genes & repeats	Left Ventricle	heart
18	chr7:48672200-48672600	Enhancers	Lung	lung
19	chr7:48672200-48672600	ZNF genes & repeats	Pancreas	Pancrea
20	chr7:48672200-48672600	Bivalent/Poised TSS	Psoas Muscle	Psoas
21	chr7:48672200-48672600	ZNF genes & repeats	Right Atrium	heart
22	chr7:48672200-48672600	ZNF genes & repeats	Spleen	Spleen
23	chr7:48672400-48672600	Active TSS	Adipose Nuclei	Adipose
24	chr7:48672400-48676200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr7:48672400-48683000	Weak transcription	Fetal Lung	lung

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