Variant report

Variant	rs7803165
Chromosome Location	chr7:126292411-126292412
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs1008905	0.83[CHB][hapmap]
rs1024417	0.84[CHB][hapmap]
rs10254233	0.83[YRI][hapmap]
rs10255379	0.92[CHB][hapmap];0.95[JPT][hapmap];0.93[ASN][1000 genomes]
rs12666621	0.80[JPT][hapmap]
rs12706740	0.90[CEU][hapmap];0.91[CHB][hapmap];0.90[JPT][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13243112	0.84[CHB][hapmap]
rs1361986	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap]
rs1419485	0.81[JPT][hapmap]
rs1419496	0.83[YRI][hapmap]
rs1419498	0.83[JPT][hapmap]
rs1579214	0.83[CHB][hapmap]
rs1815973	0.83[CHB][hapmap]
rs2237761	0.95[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2283068	0.84[CHB][hapmap]
rs2283069	0.83[CHB][hapmap]
rs2299464	0.84[YRI][hapmap]
rs2299492	0.83[CHB][hapmap]
rs2299493	0.90[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2299497	0.84[CHB][hapmap]
rs2299498	0.83[CHB][hapmap]
rs2402820	0.95[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3808153	0.84[CHB][hapmap]
rs3824014	0.90[JPT][hapmap]
rs4728051	0.83[CHB][hapmap]
rs4731315	0.81[YRI][hapmap]
rs4731316	0.85[YRI][hapmap]
rs4731320	0.91[CEU][hapmap];0.92[CHB][hapmap];0.91[JPT][hapmap];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4731321	0.84[CHB][hapmap]
rs6954055	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap]
rs6975231	1.00[CEU][hapmap];0.92[CHB][hapmap];0.95[JPT][hapmap]
rs7792723	0.83[CHB][hapmap];0.95[JPT][hapmap];0.96[ASN][1000 genomes]
rs7804379	0.82[JPT][hapmap]
rs7808017	0.91[CHB][hapmap];0.95[JPT][hapmap];0.93[ASN][1000 genomes]
rs7810270	0.83[YRI][hapmap]
rs8180790	0.93[ASN][1000 genomes]
rs9691497	0.92[CHB][hapmap];0.95[JPT][hapmap];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529300	chr7:125669493-126587858	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv1032938	chr7:126067684-126587859	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv539119	chr7:126067684-126587859	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv889187	chr7:126219766-126478190	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv1032108	chr7:126278349-126362592	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
6	nsv5939	chr7:126279355-126322778	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links