Variant report

Variant	rs7803219
Chromosome Location	chr7:147368804-147368805
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-C7orf33-1	chr7:147368803-147369225	ENSG00000230190.1
2	lnc-C7orf33-1	chr7:147368771-147368868	NONHSAT123957

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs1404736	0.85[AMR][1000 genomes]
rs1404738	0.85[AMR][1000 genomes]
rs17170638	1.00[CHB][hapmap];0.90[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17170640	0.89[YRI][hapmap]
rs17327726	0.86[AFR][1000 genomes]
rs1830043	0.85[AMR][1000 genomes]
rs2190915	1.00[CHB][hapmap];0.90[AMR][1000 genomes]
rs2215154	0.90[AMR][1000 genomes]
rs2373173	0.88[AMR][1000 genomes]
rs2373174	0.88[AMR][1000 genomes]
rs2373175	1.00[CHB][hapmap];0.88[AMR][1000 genomes]
rs2373176	1.00[CHB][hapmap];0.88[AMR][1000 genomes]
rs2888514	0.88[AMR][1000 genomes]
rs2888515	1.00[CHB][hapmap];0.88[AMR][1000 genomes]
rs4310123	1.00[CHB][hapmap];0.90[AMR][1000 genomes]
rs4379380	1.00[CHB][hapmap];0.94[AMR][1000 genomes]
rs4383899	1.00[CHB][hapmap];0.90[YRI][hapmap]
rs4383900	1.00[CHB][hapmap];0.94[AMR][1000 genomes]
rs4427087	0.90[AMR][1000 genomes]
rs4436047	1.00[CHB][hapmap];0.94[AMR][1000 genomes]
rs4455752	0.80[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs4486105	0.90[AMR][1000 genomes]
rs4487669	0.90[AMR][1000 genomes]
rs4520083	1.00[CHB][hapmap];0.90[AMR][1000 genomes]
rs60842929	1.00[EUR][1000 genomes]
rs6651095	1.00[EUR][1000 genomes]
rs6651096	1.00[EUR][1000 genomes]
rs6964327	1.00[CHB][hapmap]
rs6964959	1.00[CHB][hapmap]
rs6970360	1.00[CHB][hapmap]
rs731565	1.00[CHB][hapmap]
rs73461142	1.00[EUR][1000 genomes]
rs73741885	1.00[EUR][1000 genomes]
rs7457657	1.00[CHB][hapmap];0.88[AMR][1000 genomes]
rs758259	1.00[CHB][hapmap];0.88[AMR][1000 genomes]
rs7779521	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7779787	1.00[CHB][hapmap];0.90[YRI][hapmap];0.86[AFR][1000 genomes]
rs7786677	1.00[CHB][hapmap]
rs7799323	1.00[CHB][hapmap];0.91[YRI][hapmap];0.86[AFR][1000 genomes]
rs7801429	1.00[EUR][1000 genomes]
rs851726	1.00[CHB][hapmap]
rs851727	1.00[CHB][hapmap]
rs851728	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs851734	1.00[CHB][hapmap];0.82[AMR][1000 genomes]
rs971440	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931005	chr7:146730472-147381257	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:147367000-147369000	Weak transcription	Brain Substantia Nigra	brain

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