Variant report

Variant	rs7805682
Chromosome Location	chr7:104704403-104704404
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:104689941..104692493-chr7:104702992..104705464,2	MCF-7	breast:
2	chr7:104651636..104654670-chr7:104701757..104705518,5	MCF-7	breast:
3	chr7:104650546..104656206-chr7:104695535..104706992,23	K562	blood:
4	chr7:104702912..104705436-chr7:104706409..104709574,3	K562	blood:
5	chr7:104647926..104656528-chr7:104691112..104706949,31	K562	blood:

Variant related genes	Relation type
ENSG00000005483	Chromatin interaction
ENSG00000228393	Chromatin interaction
ENSG00000239569	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs12112458	1.00[EUR][1000 genomes]
rs17145071	1.00[EUR][1000 genomes]
rs56377710	1.00[EUR][1000 genomes]
rs60768252	1.00[EUR][1000 genomes]
rs73715208	1.00[EUR][1000 genomes]
rs73717958	1.00[EUR][1000 genomes]
rs73718226	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029283	chr7:104571741-104729168	Strong transcription Flanking Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	132 gene(s)	inside rSNPs	diseases
2	nsv888927	chr7:104614664-104781644	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	132 gene(s)	inside rSNPs	diseases
3	nsv608068	chr7:104622402-104757483	Weak transcription Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	132 gene(s)	inside rSNPs	diseases
4	esv1801863	chr7:104699637-104713419	Genic enhancers Enhancers Strong transcription Weak transcription	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:104677800-104758200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr7:104678000-104812200	Strong transcription	Dnd41	blood
3	chr7:104680600-104727000	Strong transcription	Fetal Thymus	thymus
4	chr7:104681200-104758400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr7:104681200-104760400	Strong transcription	Monocytes-CD14+_RO01746	blood
6	chr7:104681400-104727000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr7:104685400-104708000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr7:104685600-104708200	Weak transcription	Esophagus	oesophagus
9	chr7:104685600-104709000	Weak transcription	Lung	lung
10	chr7:104685600-104720400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr7:104685600-104759000	Strong transcription	Primary B cells from peripheral blood	blood
12	chr7:104687800-104721200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr7:104688200-104707600	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr7:104688800-104707400	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr7:104689400-104708200	Weak transcription	NHLF	lung
16	chr7:104689600-104705200	Weak transcription	Brain Germinal Matrix	brain
17	chr7:104689800-104708200	Weak transcription	Pancreas	Pancrea
18	chr7:104694000-104711200	Strong transcription	Primary B cells from cord blood	blood
19	chr7:104694400-104708200	Weak transcription	Gastric	stomach
20	chr7:104694600-104708200	Weak transcription	Right Atrium	heart
21	chr7:104694600-104708200	Weak transcription	Spleen	Spleen
22	chr7:104695200-104708800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr7:104697000-104706000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr7:104697000-104726600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
25	chr7:104697400-104708200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
26	chr7:104697600-104726600	Strong transcription	HUES64 Cell Line	embryonic stem cell
27	chr7:104698400-104705800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr7:104699800-104738400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
29	chr7:104700600-104705200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
30	chr7:104700800-104705000	Strong transcription	GM12878-XiMat	blood
31	chr7:104700800-104726800	Strong transcription	Primary monocytes fromperipheralblood	blood
32	chr7:104701200-104707000	Strong transcription	HSMM	muscle
33	chr7:104701200-104711400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
34	chr7:104701200-104727000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr7:104701400-104758800	Strong transcription	Rectal Mucosa Donor 29	rectum
36	chr7:104701600-104708600	Weak transcription	Ovary	ovary
37	chr7:104701600-104726800	Strong transcription	Rectal Mucosa Donor 31	rectum
38	chr7:104701600-104727000	Strong transcription	Primary T cells fromperipheralblood	blood
39	chr7:104701800-104710200	Strong transcription	NHDF-Ad	bronchial
40	chr7:104702000-104705200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr7:104702000-104707600	Weak transcription	Fetal Heart	heart
42	chr7:104702000-104708000	Weak transcription	HSMMtube	muscle
43	chr7:104702000-104708200	Weak transcription	Right Ventricle	heart
44	chr7:104702000-104709800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr7:104702200-104705400	Weak transcription	Skeletal Muscle Female	skeletal muscle
46	chr7:104702200-104706200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
47	chr7:104702200-104707000	Weak transcription	Brain Substantia Nigra	brain
48	chr7:104702200-104710600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr7:104702200-104727000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
50	chr7:104702200-104738200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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