Variant report

Variant	rs7805959
Chromosome Location	chr7:126311082-126311083
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:126309021..126312996-chr7:126337447..126339848,3	K562	blood:
2	chr7:126310132..126312996-chr7:126337447..126339045,2	K562	blood:
3	chr7:126310480..126313047-chr7:126341094..126342688,2	K562	blood:

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs1008906	0.87[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10253770	0.83[CEU][hapmap];0.83[CHB][hapmap]
rs10274867	0.82[CEU][hapmap];0.83[CHB][hapmap]
rs10275004	0.81[CHB][hapmap];0.85[JPT][hapmap]
rs10275020	0.81[CHB][hapmap];0.85[JPT][hapmap]
rs10487452	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11764888	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11765247	0.94[CEU][hapmap];0.91[CHB][hapmap]
rs11765912	0.83[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11767915	0.94[CEU][hapmap];0.91[CHB][hapmap]
rs11767976	0.94[CEU][hapmap];0.91[CHB][hapmap];0.85[JPT][hapmap]
rs11769015	0.80[ASN][1000 genomes]
rs11770188	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs11773107	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.91[YRI][hapmap]
rs1345211	0.87[CEU][hapmap];0.81[CHB][hapmap];0.85[JPT][hapmap]
rs1361982	0.88[CEU][hapmap];0.91[CHB][hapmap]
rs1468157	0.87[CEU][hapmap];0.91[CHB][hapmap];0.85[JPT][hapmap];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17149953	0.83[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap]
rs17149975	0.80[ASN][1000 genomes]
rs17149978	0.80[CEU][hapmap];0.83[CHB][hapmap]
rs17150011	0.83[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.80[ASN][1000 genomes]
rs17150014	0.83[CEU][hapmap];1.00[CHB][hapmap]
rs17610771	0.89[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.80[ASN][1000 genomes]
rs17612316	0.94[CEU][hapmap];0.91[CHB][hapmap];0.85[JPT][hapmap]
rs2157821	0.94[CEU][hapmap];0.91[CHB][hapmap]
rs2299495	0.87[CEU][hapmap];0.91[CHB][hapmap];0.85[JPT][hapmap];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs41463444	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs4731326	0.82[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap]
rs56142844	0.80[ASN][1000 genomes]
rs62477862	0.80[ASN][1000 genomes]
rs62477869	0.80[ASN][1000 genomes]
rs62477942	0.99[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62477944	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62477945	0.85[AFR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62477947	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62479322	0.80[ASN][1000 genomes]
rs6467098	0.86[JPT][hapmap]
rs6953879	0.83[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap]
rs73224961	0.80[ASN][1000 genomes]
rs73224962	0.80[ASN][1000 genomes]
rs73224963	0.80[ASN][1000 genomes]
rs7805288	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9690442	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529300	chr7:125669493-126587858	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv1032938	chr7:126067684-126587859	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv539119	chr7:126067684-126587859	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv889187	chr7:126219766-126478190	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv1032108	chr7:126278349-126362592	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
6	nsv5939	chr7:126279355-126322778	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:126308800-126311600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr7:126309800-126314600	Weak transcription	K562	blood

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