Variant report

Variant	rs7806860
Chromosome Location	chr7:38742725-38742726
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:38740549..38744081-chr7:38747124..38750067,4	K562	blood:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10243338	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10951570	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10951571	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11978728	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12701655	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12701660	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13244313	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1978170	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2074656	0.95[JPT][hapmap]
rs2240350	0.94[JPT][hapmap]
rs2240355	0.94[JPT][hapmap]
rs2286081	0.90[JPT][hapmap]
rs2286090	0.84[AMR][1000 genomes]
rs2286092	0.84[AMR][1000 genomes]
rs2286095	0.94[JPT][hapmap];0.83[AMR][1000 genomes]
rs2286097	0.88[JPT][hapmap];0.84[AMR][1000 genomes]
rs2286099	0.94[JPT][hapmap];0.84[AMR][1000 genomes]
rs2286100	0.83[AMR][1000 genomes]
rs2392595	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3207255	0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35627687	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3779126	0.94[JPT][hapmap];0.84[AMR][1000 genomes]
rs3801142	0.82[AMR][1000 genomes]
rs3801144	0.84[AMR][1000 genomes]
rs4720299	0.84[AMR][1000 genomes]
rs6462858	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6462859	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6462861	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6462862	0.94[JPT][hapmap];0.84[AMR][1000 genomes]
rs6961672	0.89[JPT][hapmap]
rs6964269	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6968515	0.84[AMR][1000 genomes]
rs6968660	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6968720	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6968795	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6969119	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7783695	0.85[CEU][hapmap]
rs7785056	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7794371	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7811599	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv887965	chr7:38706384-38793243	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:38739600-38743400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr7:38739600-38743600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr7:38740600-38743800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr7:38740800-38742800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr7:38742400-38744000	Weak transcription	HMEC	breast

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