Variant report

Variant	rs7807488
Chromosome Location	chr7:48698562-48698563
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs12538472	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs17132511	0.83[EUR][1000 genomes]
rs17132514	0.83[EUR][1000 genomes]
rs17132520	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[EUR][1000 genomes]
rs2141249	0.82[CEU][hapmap]
rs4517068	1.00[CEU][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs56328624	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs58043122	0.83[EUR][1000 genomes]
rs66481137	0.83[EUR][1000 genomes]
rs66727510	0.89[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs67429470	0.83[EUR][1000 genomes]
rs6948549	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6976521	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs73096455	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7802150	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv606894	chr7:48663637-48718598	ZNF genes & repeats Weak transcription Strong transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:48698400-48700000	Weak transcription	Fetal Kidney	kidney

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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