Variant report

Variant	rs7810922
Chromosome Location	chr7:101597464-101597465
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:101588762..101590915-chr7:101595277..101597908,2	K562	blood:
2	chr1:16839678..16842109-chr7:101595242..101598094,2	MCF-7	breast:
3	chr7:101597424..101599199-chr7:101605531..101607166,2	MCF-7	breast:
4	chr7:101459912..101462343-chr7:101596378..101599149,2	MCF-7	breast:
5	chr7:101596523..101598043-chr7:101600103..101601856,2	K562	blood:

Variant related genes	Relation type
ENSG00000261135	Chromatin interaction
ENSG00000257923	Chromatin interaction
ENSG00000206652	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10231075	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs10236615	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.93[TSI][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10238938	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10254769	0.87[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10259603	1.00[JPT][hapmap]
rs10267777	0.89[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10276057	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10441233	0.85[YRI][hapmap]
rs10488042	1.00[JPT][hapmap]
rs10488043	1.00[JPT][hapmap]
rs12533258	0.92[ASN][1000 genomes]
rs12537526	1.00[JPT][hapmap]
rs1541437	0.83[YRI][hapmap]
rs17408612	1.00[JPT][hapmap]
rs17408640	1.00[JPT][hapmap]
rs17487076	1.00[JPT][hapmap]
rs17487672	1.00[JPT][hapmap]
rs202142	1.00[JPT][hapmap]
rs202147	1.00[JPT][hapmap]
rs202150	1.00[JPT][hapmap]
rs202152	1.00[JPT][hapmap]
rs2031085	0.95[CEU][hapmap];1.00[CHB][hapmap];0.83[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.93[TSI][hapmap];0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2041008	0.87[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs6465838	0.89[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs6465839	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6973312	1.00[JPT][hapmap]
rs7780631	1.00[JPT][hapmap]
rs7785266	0.87[ASW][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];0.93[YRI][hapmap];0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7791278	0.89[AMR][1000 genomes]
rs7796818	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];0.90[MKK][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7796995	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7805379	1.00[JPT][hapmap]
rs9969318	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.93[TSI][hapmap];0.83[YRI][hapmap];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024319	chr7:101368299-101668159	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv539047	chr7:101368299-101668159	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
3	nsv1020372	chr7:101420819-101718950	Enhancers Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
4	nsv482846	chr7:101539981-101707666	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv888827	chr7:101562674-101650302	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:84 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:101578200-101612000	Weak transcription	HepG2	liver
2	chr7:101578200-101671200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr7:101583400-101608000	Weak transcription	Primary B cells from cord blood	blood
4	chr7:101586000-101603200	Weak transcription	Fetal Intestine Large	intestine
5	chr7:101586400-101615800	Weak transcription	Duodenum Mucosa	Duodenum
6	chr7:101586400-101620600	Weak transcription	Adipose Nuclei	Adipose
7	chr7:101587000-101598000	Strong transcription	Fetal Intestine Small	intestine
8	chr7:101587000-101601200	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr7:101591400-101628200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr7:101591600-101598600	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr7:101591600-101600000	Weak transcription	HSMMtube	muscle
12	chr7:101591600-101607800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr7:101591800-101598400	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr7:101591800-101598400	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr7:101591800-101598600	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr7:101592000-101598600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
17	chr7:101592200-101597800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr7:101592200-101602600	Weak transcription	Brain Anterior Caudate	brain
19	chr7:101592400-101629200	Weak transcription	Aorta	Aorta
20	chr7:101593800-101599000	Enhancers	Colon Smooth Muscle	Colon
21	chr7:101594600-101601400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr7:101594800-101612400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr7:101595400-101599000	Enhancers	Placenta Amnion	Placenta Amnion
24	chr7:101595600-101597600	Strong transcription	Primary T cells from cord blood	blood
25	chr7:101595600-101597600	Enhancers	Stomach Mucosa	stomach
26	chr7:101595800-101597600	Enhancers	Hela-S3	cervix
27	chr7:101595800-101598800	Enhancers	Duodenum Smooth Muscle	Duodenum
28	chr7:101595800-101599200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr7:101595800-101599200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr7:101595800-101599200	Genic enhancers	Fetal Stomach	stomach
31	chr7:101595800-101599200	Enhancers	Rectal Smooth Muscle	rectum
32	chr7:101596000-101598000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr7:101596000-101598000	Weak transcription	Fetal Thymus	thymus
34	chr7:101596000-101598800	Enhancers	Primary monocytes fromperipheralblood	blood
35	chr7:101596000-101598800	Enhancers	Monocytes-CD14+_RO01746	blood
36	chr7:101596000-101599200	Enhancers	Primary hematopoietic stem cells	blood
37	chr7:101596200-101599400	Enhancers	Primary B cells from peripheral blood	blood
38	chr7:101596200-101601200	Enhancers	Dnd41	blood
39	chr7:101596200-101606200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
40	chr7:101596200-101606400	Weak transcription	Thymus	Thymus
41	chr7:101596200-101615400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
42	chr7:101596400-101597600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chr7:101596400-101597800	Weak transcription	Colonic Mucosa	Colon
44	chr7:101596400-101597800	Weak transcription	Right Ventricle	heart
45	chr7:101596400-101601200	Weak transcription	Esophagus	oesophagus
46	chr7:101596400-101602200	Weak transcription	Placenta	Placenta
47	chr7:101596400-101603800	Weak transcription	Gastric	stomach
48	chr7:101596400-101606400	Weak transcription	Pancreas	Pancrea
49	chr7:101596400-101608000	Weak transcription	Spleen	Spleen
50	chr7:101596400-101615800	Weak transcription	Sigmoid Colon	Sigmoid Colon

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links