Variant report

Variant	rs7811599
Chromosome Location	chr7:38743447-38743448
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:38740549..38744081-chr7:38747124..38750067,4	K562	blood:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10232480	0.81[ASN][1000 genomes]
rs10243338	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10951570	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10951571	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11978728	0.99[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12538785	0.81[ASN][1000 genomes]
rs12701655	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12701660	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13244313	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1978170	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2240355	0.81[ASN][1000 genomes]
rs2286090	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2286092	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2286095	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2286097	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2286099	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2286100	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2286102	0.81[ASN][1000 genomes]
rs2392595	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3207255	0.95[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35627687	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3779126	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs3801142	0.80[AMR][1000 genomes]
rs3801144	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs4720298	0.81[ASN][1000 genomes]
rs4720299	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs4723783	0.81[ASN][1000 genomes]
rs6462858	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6462859	0.99[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6462861	0.99[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6462862	0.82[AMR][1000 genomes]
rs6964269	0.84[AMR][1000 genomes]
rs6968515	0.86[AMR][1000 genomes]
rs6968660	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6968720	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6968795	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6969119	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7785056	0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7794371	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7806860	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv887965	chr7:38706384-38793243	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:38739600-38743600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr7:38740600-38743800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr7:38742400-38744000	Weak transcription	HMEC	breast
4	chr7:38742800-38745000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr7:38743400-38744600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr7:38743400-38744800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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