Variant report

Variant	rs7815958
Chromosome Location	chr8:10917721-10917722
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:10905368..10906915-chr8:10917694..10919634,2	K562	blood:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10096332	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10111974	0.89[AMR][1000 genomes]
rs11775350	0.90[EUR][1000 genomes]
rs11781155	0.88[ASN][1000 genomes]
rs13251510	0.94[ASN][1000 genomes]
rs28447601	0.90[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs56078888	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6601554	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6983301	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6997523	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7016414	0.93[ASN][1000 genomes]
rs7016760	0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7821584	0.80[ASN][1000 genomes]
rs7839902	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035072	chr8:10819444-11480692	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv539473	chr8:10819444-11480692	Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	esv3443449	chr8:10915967-10918515	Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:10916400-10917800	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
2	chr8:10916400-10917800	Bivalent Enhancer	Primary B cells from peripheral blood	blood
3	chr8:10916400-10918000	Bivalent Enhancer	Fetal Brain Male	brain
4	chr8:10916600-10917800	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
5	chr8:10916600-10918000	Bivalent Enhancer	Placenta Amnion	Placenta Amnion
6	chr8:10916800-10917800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr8:10916800-10917800	Bivalent Enhancer	Primary hematopoietic stem cells short term culture	blood
8	chr8:10916800-10917800	Active TSS	Brain Inferior Temporal Lobe	brain
9	chr8:10916800-10918000	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr8:10917000-10917800	Weak transcription	Brain Cingulate Gyrus	brain
11	chr8:10917000-10917800	Bivalent Enhancer	Fetal Muscle Leg	muscle
12	chr8:10917000-10917800	Bivalent Enhancer	Fetal Stomach	stomach
13	chr8:10917000-10918000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
14	chr8:10917000-10918400	Enhancers	Brain Hippocampus Middle	brain
15	chr8:10917000-10919400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr8:10917000-10926000	Weak transcription	Gastric	stomach
17	chr8:10917400-10917800	Flanking Bivalent TSS/Enh	ES-I3 Cell Line	embryonic stem cell
18	chr8:10917400-10917800	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
19	chr8:10917400-10917800	Flanking Bivalent TSS/Enh	HUES64 Cell Line	embryonic stem cell
20	chr8:10917400-10917800	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr8:10917400-10917800	Bivalent Enhancer	Primary neutrophils fromperipheralblood	blood
22	chr8:10917400-10917800	Bivalent Enhancer	Muscle Satellite Cultured Cells	--
23	chr8:10917400-10917800	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr8:10917400-10918000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr8:10917400-10918000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr8:10917400-10918000	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
27	chr8:10917400-10918000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr8:10917400-10918000	Enhancers	HMEC	breast
29	chr8:10917400-10918200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr8:10917400-10918400	Enhancers	Brain Substantia Nigra	brain
31	chr8:10917400-10923400	Weak transcription	Psoas Muscle	Psoas
32	chr8:10917400-10923400	Weak transcription	Right Atrium	heart
33	chr8:10917600-10917800	Bivalent Enhancer	ES-WA7 Cell Line	embryonic stem cell
34	chr8:10917600-10917800	Bivalent Enhancer	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
35	chr8:10917600-10917800	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
36	chr8:10917600-10917800	Flanking Bivalent TSS/Enh	iPS DF 19.11 Cell Line	embryonic stem cell
37	chr8:10917600-10917800	Flanking Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
38	chr8:10917600-10917800	Bivalent Enhancer	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr8:10917600-10917800	Bivalent Enhancer	Fetal Brain Female	brain
40	chr8:10917600-10917800	Bivalent Enhancer	Skeletal Muscle Female	skeletal muscle
41	chr8:10917600-10917800	Bivalent Enhancer	Stomach Mucosa	stomach
42	chr8:10917600-10917800	Flanking Bivalent TSS/Enh	NH-A	brain
43	chr8:10917600-10918000	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
44	chr8:10917600-10918000	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr8:10917600-10918000	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr8:10917600-10918000	Enhancers	Brain Anterior Caudate	brain
47	chr8:10917600-10918000	Enhancers	GM12878-XiMat	blood
48	chr8:10917600-10918000	Enhancers	HSMM	muscle
49	chr8:10917600-10918200	Enhancers	Brain Germinal Matrix	brain
50	chr8:10917600-10918400	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell

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