Variant report

Variant	rs7818911
Chromosome Location	chr8:11027938-11027939
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOS	chr8:11027876-11028155	MCF10A-Er-Src	breast:	n/a	n/a
2	FOS	chr8:11027883-11028128	MCF10A-Er-Src	breast:	n/a	n/a
3	FOS	chr8:11027852-11028154	MCF10A-Er-Src	breast:	n/a	n/a
4	BCL3	chr8:11027876-11028173	GM12878	blood:	n/a	n/a

Variant related genes	Relation type
ENSG00000231965	TF binding region

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10102701	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10282848	1.00[CEU][hapmap]
rs11986093	1.00[CEU][hapmap];0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17152881	1.00[CEU][hapmap]
rs17152921	1.00[CEU][hapmap]
rs17152930	1.00[CEU][hapmap]
rs17152949	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17725809	1.00[CEU][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17726352	1.00[YRI][hapmap]
rs28661649	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4270924	1.00[CEU][hapmap]
rs7837437	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9329237	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035072	chr8:10819444-11480692	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv539473	chr8:10819444-11480692	Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	esv1815171	chr8:10940039-11128712	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
4	nsv1025426	chr8:10942929-11037903	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv1026331	chr8:10955941-11046394	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv529399	chr8:10970091-11805960	Enhancers Strong transcription Weak transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
7	nsv519941	chr8:11016889-11039816	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:11013600-11028800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr8:11016600-11032200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr8:11022600-11035000	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr8:11024400-11029200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr8:11024800-11028800	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
6	chr8:11025600-11028800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr8:11026000-11029000	ZNF genes & repeats	GM12878-XiMat	blood
8	chr8:11026200-11028400	ZNF genes & repeats	Primary B cells from peripheral blood	blood
9	chr8:11026400-11028000	ZNF genes & repeats	Primary B cells from cord blood	blood
10	chr8:11026600-11034200	Weak transcription	Esophagus	oesophagus
11	chr8:11026800-11028000	Weak transcription	NH-A	brain
12	chr8:11026800-11028600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr8:11026800-11031200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
14	chr8:11026800-11034600	Weak transcription	HSMM	muscle
15	chr8:11026800-11035000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr8:11026800-11035200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr8:11026800-11035200	Weak transcription	HMEC	breast
18	chr8:11026800-11037200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
19	chr8:11026800-11043600	Weak transcription	Pancreas	Pancrea
20	chr8:11026800-11043800	Weak transcription	Spleen	Spleen
21	chr8:11027000-11031000	Weak transcription	HSMMtube	muscle
22	chr8:11027000-11031200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
23	chr8:11027000-11034800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr8:11027000-11035000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr8:11027200-11029800	Weak transcription	Primary T helper cells PMA-I stimulated	--
26	chr8:11027200-11035000	Weak transcription	Muscle Satellite Cultured Cells	--
27	chr8:11027600-11028000	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr8:11027600-11028600	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
29	chr8:11027800-11028200	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood

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