Variant report

Variant	rs7821225
Chromosome Location	chr8:10862834-10862835
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MYC	chr8:10862541-10862896	MCF10A-Er-Src	breast:	n/a	n/a
2	FOS	chr8:10862555-10862874	MCF10A-Er-Src	breast:	n/a	n/a
3	CEBPB	chr8:10862533-10862864	A549	lung:	n/a	chr8:10862719-10862730
4	CEBPB	chr8:10862544-10862868	HepG2	liver:	n/a	chr8:10862719-10862730
5	FOS	chr8:10862527-10862896	MCF10A-Er-Src	breast:	n/a	n/a
6	STAT3	chr8:10862612-10862842	MCF10A-Er-Src	breast:	n/a	n/a
7	FOS	chr8:10862497-10862894	MCF10A-Er-Src	breast:	n/a	n/a
8	CEBPB	chr8:10862530-10862891	K562	blood:	n/a	chr8:10862719-10862730
9	ATF3	chr8:10862595-10862915	K562	blood:	n/a	n/a
10	FOS	chr8:10862520-10862885	MCF10A-Er-Src	breast:	n/a	n/a
11	MYC	chr8:10862562-10862863	MCF10A-Er-Src	breast:	n/a	n/a
12	MYC	chr8:10862533-10863077	K562	blood:	n/a	n/a
13	ATF1	chr8:10862533-10862884	K562	blood:	n/a	n/a
14	CEBPB	chr8:10862532-10862863	IMR90	lung:	n/a	chr8:10862719-10862730
15	EP300	chr8:10862548-10862888	K562	blood:	n/a	n/a
16	JUND	chr8:10862506-10862993	K562	blood:	n/a	n/a
17	ATF3	chr8:10862488-10862931	HCT-116	colon:	n/a	n/a
18	CEBPB	chr8:10862431-10862996	HCT-116	colon:	n/a	chr8:10862719-10862730
19	CEBPB	chr8:10862534-10862890	Hela-S3	cervix:	n/a	chr8:10862719-10862730
20	JUN	chr8:10862126-10862964	K562	blood:	n/a	n/a
21	CEBPB	chr8:10862595-10862877	H1-hESC	embryonic stem cell:	n/a	chr8:10862719-10862730
22	CEBPB	chr8:10862430-10862915	HCT-116	colon:	n/a	chr8:10862719-10862730
23	CEBPB	chr8:10862555-10862874	K562	blood:	n/a	chr8:10862719-10862730

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:10861649..10864572-chr8:10871901..10875246,3	K562	blood:
2	chr8:10857972..10860249-chr8:10861923..10863991,2	K562	blood:

Variant related genes	Relation type
XKR6	TF binding region
ENSG00000171044	Chromatin interaction

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10091913	0.93[ASN][1000 genomes]
rs10107384	0.93[ASN][1000 genomes]
rs10111751	0.94[EUR][1000 genomes]
rs10216472	0.93[ASN][1000 genomes]
rs10217059	0.93[ASN][1000 genomes]
rs11250108	0.93[ASN][1000 genomes]
rs11779199	0.94[ASN][1000 genomes]
rs11785788	0.93[EUR][1000 genomes]
rs11988372	0.97[ASN][1000 genomes]
rs11995682	0.97[ASN][1000 genomes]
rs12216757	0.93[ASN][1000 genomes]
rs12216875	1.00[ASN][1000 genomes]
rs3923921	0.89[EUR][1000 genomes]
rs4074822	0.88[ASN][1000 genomes]
rs4320511	0.93[ASN][1000 genomes]
rs4507728	0.90[ASN][1000 genomes]
rs4840531	0.94[EUR][1000 genomes]
rs4841471	0.93[ASN][1000 genomes]
rs4841472	0.93[ASN][1000 genomes]
rs4841473	0.93[EUR][1000 genomes]
rs4841474	0.90[ASN][1000 genomes]
rs4841475	0.97[ASN][1000 genomes]
rs4841477	0.97[ASN][1000 genomes]
rs4841478	0.93[ASN][1000 genomes]
rs4841479	0.93[ASN][1000 genomes]
rs56052312	0.90[ASN][1000 genomes]
rs56112120	0.95[EUR][1000 genomes]
rs6601546	0.90[ASN][1000 genomes]
rs67113145	0.94[EUR][1000 genomes]
rs6995129	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7350066	0.96[EUR][1000 genomes]
rs7350072	0.96[EUR][1000 genomes]
rs7350074	0.96[EUR][1000 genomes]
rs7813323	0.93[EUR][1000 genomes]
rs7820231	0.96[EUR][1000 genomes]
rs7824797	0.93[ASN][1000 genomes]
rs7825690	0.84[ASN][1000 genomes]
rs7826561	0.90[ASN][1000 genomes]
rs7833832	0.97[ASN][1000 genomes]
rs7836687	0.87[ASN][1000 genomes]
rs7836720	0.87[ASN][1000 genomes]
rs7837828	0.93[ASN][1000 genomes]
rs7838833	1.00[ASN][1000 genomes]
rs7842214	0.93[EUR][1000 genomes]
rs9657542	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035072	chr8:10819444-11480692	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv539473	chr8:10819444-11480692	Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	esv3339026	chr8:10858742-10862940	Weak transcription Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:10856200-10864800	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr8:10859400-10865200	Weak transcription	Brain Hippocampus Middle	brain
3	chr8:10859400-10872200	Weak transcription	Brain Angular Gyrus	brain
4	chr8:10859800-10864800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr8:10860000-10864800	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr8:10860000-10864800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr8:10860000-10865000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr8:10860000-10865000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr8:10860000-10865000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr8:10860200-10864800	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr8:10860200-10865000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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