Variant report

Variant	rs7824635
Chromosome Location	chr8:126356683-126356684
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:126355313..126358836-chr8:126365344..126367404,3	MCF-7	breast:
2	chr8:126356437..126358759-chr8:126364213..126366728,2	K562	blood:
3	chr8:126355551..126359333-chr8:126441199..126445900,5	MCF-7	breast:
4	chr8:126345301..126348257-chr8:126356475..126358002,2	K562	blood:
5	chr8:126218358..126220845-chr8:126354499..126357060,2	K562	blood:
6	chr8:126345301..126349169-chr8:126355838..126358002,3	K562	blood:
7	chr8:126347469..126349929-chr8:126354038..126356701,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000173334	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs16900479	1.00[CHB][hapmap]
rs17318327	1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs17403341	1.00[CHB][hapmap];0.92[ASN][1000 genomes]
rs4006653	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58318216	0.81[AFR][1000 genomes]
rs58650877	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60652599	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6651234	1.00[ASN][1000 genomes]
rs6651235	1.00[ASN][1000 genomes]
rs6651236	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6651237	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7004876	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73336867	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73338880	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73338881	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73338901	1.00[ASN][1000 genomes]
rs7822467	0.91[YRI][hapmap]
rs7834583	0.82[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949614	chr8:126063646-126376699	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
2	esv3410448	chr8:126339813-126418053	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:69 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:126322000-126374200	Weak transcription	Aorta	Aorta
2	chr8:126330800-126369200	Weak transcription	Primary T helper cells fromperipheralblood	blood
3	chr8:126331200-126357400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr8:126332600-126369400	Weak transcription	Fetal Stomach	stomach
5	chr8:126340000-126359600	Weak transcription	Primary T cells fromperipheralblood	blood
6	chr8:126342000-126369400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr8:126344600-126362400	Weak transcription	Primary T cells from cord blood	blood
8	chr8:126348800-126369800	Weak transcription	Gastric	stomach
9	chr8:126351400-126360400	Enhancers	Primary monocytes fromperipheralblood	blood
10	chr8:126352200-126362000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr8:126352200-126363000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr8:126353200-126369600	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr8:126353600-126365000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
14	chr8:126354000-126381200	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr8:126354600-126361000	Weak transcription	Dnd41	blood
16	chr8:126354800-126356800	Enhancers	Liver	Liver
17	chr8:126354800-126369000	Weak transcription	Ovary	ovary
18	chr8:126354800-126371800	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr8:126354800-126379800	Weak transcription	Pancreas	Pancrea
20	chr8:126354800-126380400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
21	chr8:126354800-126381600	Weak transcription	Brain Anterior Caudate	brain
22	chr8:126354800-126383200	Weak transcription	Brain Angular Gyrus	brain
23	chr8:126355000-126356800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
24	chr8:126355000-126358800	Weak transcription	Duodenum Mucosa	Duodenum
25	chr8:126355000-126361000	Weak transcription	Psoas Muscle	Psoas
26	chr8:126355000-126361200	Weak transcription	HUES6 Cell Line	embryonic stem cell
27	chr8:126355000-126365000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
28	chr8:126355000-126369400	Weak transcription	Rectal Mucosa Donor 29	rectum
29	chr8:126355000-126369600	Weak transcription	Fetal Intestine Large	intestine
30	chr8:126355000-126374600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr8:126355200-126356800	Enhancers	GM12878-XiMat	blood
32	chr8:126355200-126358000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr8:126355200-126358600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr8:126355200-126358600	Weak transcription	Pancreatic Islets	Pancreatic Islet
35	chr8:126355200-126358600	Weak transcription	Fetal Lung	lung
36	chr8:126355200-126358800	Weak transcription	Stomach Mucosa	stomach
37	chr8:126355200-126360200	Enhancers	Primary neutrophils fromperipheralblood	blood
38	chr8:126355200-126361000	Weak transcription	Fetal Intestine Small	intestine
39	chr8:126355200-126362400	Weak transcription	Skeletal Muscle Female	skeletal muscle
40	chr8:126355200-126369400	Weak transcription	Left Ventricle	heart
41	chr8:126355200-126369400	Weak transcription	Spleen	Spleen
42	chr8:126355200-126369400	Weak transcription	K562	blood
43	chr8:126355200-126369800	Weak transcription	Duodenum Smooth Muscle	Duodenum
44	chr8:126355200-126373000	Weak transcription	NH-A	brain
45	chr8:126355200-126374800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr8:126355200-126374800	Weak transcription	HMEC	breast
47	chr8:126355200-126378800	Weak transcription	Brain Inferior Temporal Lobe	brain
48	chr8:126355400-126362400	Weak transcription	Thymus	Thymus
49	chr8:126355400-126366800	Weak transcription	HepG2	liver
50	chr8:126355400-126369600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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