Variant report

Variant	rs7825375
Chromosome Location	chr8:125990008-125990009
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:125987736..125990317-chr8:125991147..125995014,5	K562	blood:
2	chr8:125989243..125991340-chr8:126007563..126010410,2	MCF-7	breast:
3	chr8:125989560..125991489-chr8:125999508..126002227,2	K562	blood:
4	chr8:125985948..125987656-chr8:125989770..125992616,2	K562	blood:
5	chr8:125986784..125990540-chr8:125992857..125996075,4	K562	blood:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs16900320	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28392978	1.00[EUR][1000 genomes]
rs28810782	1.00[EUR][1000 genomes]
rs56798105	1.00[EUR][1000 genomes]
rs57107402	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57708414	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57876250	1.00[EUR][1000 genomes]
rs58217279	1.00[EUR][1000 genomes]
rs59134934	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59472229	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59652837	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60361771	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60524861	1.00[EUR][1000 genomes]
rs73337613	1.00[EUR][1000 genomes]
rs7814242	1.00[EUR][1000 genomes]
rs7820192	1.00[EUR][1000 genomes]
rs7839038	1.00[EUR][1000 genomes]
rs7839468	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891434	chr8:125630655-126324432	Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	80 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:125985200-125990200	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
2	chr8:125985200-125990400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr8:125986000-125990600	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr8:125986000-125995600	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr8:125986200-125991600	ZNF genes & repeats	Primary B cells from cord blood	blood
6	chr8:125986200-125995800	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr8:125986400-125991000	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr8:125986400-125997200	ZNF genes & repeats	Liver	Liver
9	chr8:125986400-126006000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr8:125986600-125995600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr8:125987200-125990200	ZNF genes & repeats	Primary T cells from cord blood	blood
12	chr8:125987200-125990400	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr8:125987200-125991000	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
14	chr8:125987200-125991200	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr8:125987200-125991400	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
16	chr8:125987200-125992600	ZNF genes & repeats	Adipose Nuclei	Adipose
17	chr8:125987400-125991400	ZNF genes & repeats	Primary T killer naive cells fromperipheralblood	blood
18	chr8:125987400-125991600	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
19	chr8:125987600-125991600	ZNF genes & repeats	Brain Hippocampus Middle	brain
20	chr8:125987800-125997400	ZNF genes & repeats	Primary hematopoietic stem cells	blood
21	chr8:125988200-125995400	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr8:125988400-125990600	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
23	chr8:125988400-125991400	ZNF genes & repeats	Dnd41	blood
24	chr8:125988600-125990200	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
25	chr8:125988600-125990200	ZNF genes & repeats	Fetal Muscle Trunk	muscle
26	chr8:125988600-125990200	ZNF genes & repeats	Stomach Smooth Muscle	stomach
27	chr8:125988600-125990400	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
28	chr8:125988600-125990600	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr8:125988600-125990800	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr8:125988600-125990800	ZNF genes & repeats	Duodenum Mucosa	Duodenum
31	chr8:125988600-125991000	ZNF genes & repeats	Rectal Mucosa Donor 29	rectum
32	chr8:125988600-125991200	ZNF genes & repeats	Fetal Lung	lung
33	chr8:125988600-125991400	ZNF genes & repeats	Brain Substantia Nigra	brain
34	chr8:125988600-125991600	ZNF genes & repeats	Brain Angular Gyrus	brain
35	chr8:125988600-125994600	ZNF genes & repeats	Fetal Muscle Leg	muscle
36	chr8:125988800-125990200	ZNF genes & repeats	Brain Cingulate Gyrus	brain
37	chr8:125988800-125990200	ZNF genes & repeats	Brain Dorsolateral Prefrontal Cortex	brain
38	chr8:125988800-125990200	ZNF genes & repeats	Fetal Thymus	thymus
39	chr8:125988800-125990200	ZNF genes & repeats	Left Ventricle	heart
40	chr8:125988800-125990200	ZNF genes & repeats	Ovary	ovary
41	chr8:125988800-125990400	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
42	chr8:125988800-125990400	ZNF genes & repeats	Brain Anterior Caudate	brain
43	chr8:125988800-125990400	ZNF genes & repeats	Colon Smooth Muscle	Colon
44	chr8:125988800-125990600	ZNF genes & repeats	Fetal Brain Male	brain
45	chr8:125988800-125991400	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
46	chr8:125988800-125991600	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
47	chr8:125989000-125990600	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
48	chr8:125989000-125990600	ZNF genes & repeats	HepG2	liver
49	chr8:125989000-125991200	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
50	chr8:125989000-125991600	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin

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