Variant report

Variant	rs7825755
Chromosome Location	chr8:99661770-99661771
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs12681956	1.00[JPT][hapmap]
rs35696573	1.00[CHD][hapmap]
rs4629834	1.00[CHD][hapmap]
rs7464632	1.00[CHD][hapmap]
rs7831149	1.00[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027362	chr8:99469281-99715845	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv539689	chr8:99469281-99715845	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv891218	chr8:99507313-99906221	Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:99621800-99663000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr8:99630000-99662600	Weak transcription	Pancreas	Pancrea
3	chr8:99636200-99662600	Weak transcription	Fetal Intestine Small	intestine
4	chr8:99636200-99682400	Weak transcription	Fetal Stomach	stomach
5	chr8:99636600-99662800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr8:99638200-99671200	Weak transcription	GM12878-XiMat	blood
7	chr8:99647800-99662600	Weak transcription	Fetal Lung	lung
8	chr8:99652600-99680600	Weak transcription	NHEK	skin
9	chr8:99659400-99662600	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr8:99659400-99662600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr8:99659400-99676000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr8:99659600-99662400	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr8:99659600-99662600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr8:99660000-99662600	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr8:99660000-99670200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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