Variant report

Variant	rs7825799
Chromosome Location	chr8:126256396-126256397
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:126255433..126260408-chr8:126440662..126444695,4	K562	blood:

Variant related genes	Relation type
ENSG00000173334	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11987707	1.00[CHB][hapmap];0.85[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs11991576	0.81[ASN][1000 genomes]
rs12056336	0.90[CHB][hapmap];0.89[JPT][hapmap]
rs12679295	0.90[CHB][hapmap];0.89[JPT][hapmap]
rs12680754	0.88[JPT][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12681565	0.90[CHB][hapmap];0.89[JPT][hapmap]
rs12682185	0.90[CHB][hapmap];0.89[JPT][hapmap]
rs16900457	0.90[CHB][hapmap];0.89[JPT][hapmap]
rs6988747	0.88[CHB][hapmap];0.89[JPT][hapmap]
rs6992545	0.90[CHB][hapmap];0.89[JPT][hapmap]
rs6997136	0.89[CHB][hapmap];0.89[JPT][hapmap]
rs6997862	0.90[CHB][hapmap]
rs7002224	0.90[CHB][hapmap];0.89[JPT][hapmap]
rs7010813	1.00[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7010992	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7014707	0.90[CHB][hapmap];0.89[JPT][hapmap]
rs7017497	0.84[CHB][hapmap];0.88[JPT][hapmap]
rs7823372	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs7827336	0.90[CHB][hapmap];0.89[JPT][hapmap]
rs7833463	0.90[CHB][hapmap];0.89[JPT][hapmap]
rs7837996	0.90[CHB][hapmap];0.89[JPT][hapmap]
rs7844453	0.90[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891434	chr8:125630655-126324432	Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
2	nsv949614	chr8:126063646-126376699	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:126226800-126260200	Weak transcription	Right Ventricle	heart
2	chr8:126233800-126264800	Weak transcription	Left Ventricle	heart
3	chr8:126239600-126274000	Weak transcription	Primary T cells fromperipheralblood	blood
4	chr8:126240400-126267000	Weak transcription	Primary T cells from cord blood	blood
5	chr8:126241400-126258000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr8:126243000-126260000	Weak transcription	GM12878-XiMat	blood
7	chr8:126243200-126267000	Weak transcription	Brain Angular Gyrus	brain
8	chr8:126245600-126269600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr8:126247200-126265200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr8:126249600-126258000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
11	chr8:126250200-126265000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr8:126251400-126272000	Weak transcription	Fetal Intestine Small	intestine
13	chr8:126251600-126265000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr8:126251600-126265200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
15	chr8:126254000-126270400	Weak transcription	Hela-S3	cervix
16	chr8:126254200-126256600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr8:126255200-126268600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr8:126255200-126271600	Weak transcription	Right Atrium	heart
19	chr8:126255400-126287800	Weak transcription	Primary B cells from cord blood	blood
20	chr8:126256200-126271600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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