The 2.0 version of rSNPBase

Variant report

Variant rs782617
Chromosome Location chr2:55908629-55908630
allele A/C
Outlinks Ensembl   UCSC
Chromatin state (count:125 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:55846800-55919800 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
2 chr2:55847400-55911000 Weak transcription Placenta Amnion Placenta Amnion
3 chr2:55858200-55920400 Weak transcription Fetal Heart heart
4 chr2:55864400-55919600 Weak transcription NHLF lung
5 chr2:55866600-55920000 Weak transcription ES-WA7 Cell Line embryonic stem cell
6 chr2:55870400-55920000 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
7 chr2:55870600-55920000 Weak transcription Rectal Smooth Muscle rectum
8 chr2:55870800-55909000 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
9 chr2:55870800-55920400 Weak transcription Aorta Aorta
10 chr2:55871000-55920000 Weak transcription Spleen Spleen
11 chr2:55873200-55919800 Weak transcription Small Intestine intestine
12 chr2:55874800-55920200 Weak transcription Pancreas Pancrea
13 chr2:55879000-55917600 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
14 chr2:55879400-55914200 Strong transcription HUES64 Cell Line embryonic stem cell
15 chr2:55881200-55913000 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
16 chr2:55882200-55909600 Weak transcription Brain Germinal Matrix brain
17 chr2:55883000-55919800 Weak transcription HSMMtube muscle
18 chr2:55888800-55909600 Weak transcription Primary T helper naive cells from peripheral blood blood
19 chr2:55889800-55918400 Strong transcription Primary hematopoietic stem cells short term culture blood
20 chr2:55890200-55915600 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
21 chr2:55890400-55914200 Strong transcription Primary T helper cells PMA-I stimulated --
22 chr2:55892000-55914000 Strong transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
23 chr2:55892200-55914000 Strong transcription Primary monocytes fromperipheralblood blood
24 chr2:55892400-55919800 Weak transcription Primary neutrophils fromperipheralblood blood
25 chr2:55892600-55917000 Strong transcription Dnd41 blood
26 chr2:55893200-55908800 Strong transcription Osteobl bone
27 chr2:55893200-55915800 Strong transcription Foreskin Keratinocyte Primary Cells skin02 Skin
28 chr2:55893800-55909800 Weak transcription Primary T killer naive cells fromperipheralblood blood
29 chr2:55893800-55910200 Weak transcription Colonic Mucosa Colon
30 chr2:55894000-55919800 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
31 chr2:55894200-55909400 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
32 chr2:55895800-55920000 Weak transcription Right Ventricle heart
33 chr2:55896200-55909800 Weak transcription H9 Cell Line embryonic stem cell
34 chr2:55897000-55914400 Strong transcription Foreskin Melanocyte Primary Cells skin03 Skin
35 chr2:55897600-55913600 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
36 chr2:55897600-55914200 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
37 chr2:55898000-55913600 Strong transcription Fetal Adrenal Gland Adrenal Gland
38 chr2:55900200-55909600 Weak transcription NH-A brain
39 chr2:55901200-55915000 Strong transcription HUES6 Cell Line embryonic stem cell
40 chr2:55901200-55915200 Strong transcription GM12878-XiMat blood
41 chr2:55901800-55914200 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
42 chr2:55901800-55916000 Strong transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
43 chr2:55902000-55914000 Strong transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
44 chr2:55902000-55914000 Strong transcription Primary T cells fromperipheralblood blood
45 chr2:55902000-55915200 Strong transcription Primary T helper cells fromperipheralblood blood
46 chr2:55902000-55916000 Strong transcription HUES48 Cell Line embryonic stem cell
47 chr2:55902800-55909200 Weak transcription Sigmoid Colon Sigmoid Colon
48 chr2:55903200-55915800 Strong transcription Primary T helper 17 cells PMA-I stimulated --
49 chr2:55903400-55914200 Strong transcription Adipose Nuclei Adipose
50 chr2:55903600-55913200 Strong transcription Fetal Muscle Trunk muscle

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Last update: Aug 31, 2015