Variant report

Variant	rs78274164
Chromosome Location	chr3:119302030-119302031
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ZEB1	chr3:119301423-119302059	GM12878	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:119297885..119300271-chr3:119300327..119302628,2	K562	blood:

Variant related genes	Relation type
ENSG00000272967	TF binding region
ENSG00000272967	Chromatin interaction
ENSG00000144843	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3487859	chr3:118570588-119419623	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	esv3487860	chr3:118570588-119419623	Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
3	nsv829695	chr3:119178890-119367996	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
4	esv1831824	chr3:119263607-119402474	Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
5	nsv3963	chr3:119301064-119345904	Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:119299200-119303400	Weak transcription	Aorta	Aorta
2	chr3:119299200-119307800	Weak transcription	Esophagus	oesophagus
3	chr3:119299200-119308000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr3:119299200-119314600	Weak transcription	Ovary	ovary
5	chr3:119299200-119315000	Weak transcription	Gastric	stomach
6	chr3:119299400-119304000	Weak transcription	HSMMtube	muscle
7	chr3:119299400-119306200	Weak transcription	Primary B cells from cord blood	blood
8	chr3:119299400-119306400	Weak transcription	Fetal Intestine Large	intestine
9	chr3:119299400-119307400	Weak transcription	Thymus	Thymus
10	chr3:119299400-119307800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr3:119299400-119314200	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr3:119299400-119314400	Weak transcription	Brain Angular Gyrus	brain
13	chr3:119299600-119303400	Weak transcription	Colon Smooth Muscle	Colon
14	chr3:119299600-119303400	Weak transcription	Placenta	Placenta
15	chr3:119299600-119303600	Weak transcription	Lung	lung
16	chr3:119299600-119304200	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr3:119299600-119304200	Weak transcription	Osteobl	bone
18	chr3:119299600-119304800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr3:119299600-119305000	Weak transcription	Fetal Stomach	stomach
20	chr3:119299600-119305000	Weak transcription	Right Ventricle	heart
21	chr3:119299600-119305000	Weak transcription	HSMM	muscle
22	chr3:119299600-119305200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr3:119299600-119305200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr3:119299600-119305200	Weak transcription	Pancreas	Pancrea
25	chr3:119299600-119306600	Weak transcription	Fetal Kidney	kidney
26	chr3:119299600-119307200	Weak transcription	Duodenum Mucosa	Duodenum
27	chr3:119299600-119307200	Weak transcription	Fetal Intestine Small	intestine
28	chr3:119299600-119307200	Weak transcription	Fetal Lung	lung
29	chr3:119299600-119307200	Weak transcription	Rectal Mucosa Donor 31	rectum
30	chr3:119299600-119307400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
31	chr3:119299600-119307800	Weak transcription	Brain Hippocampus Middle	brain
32	chr3:119299600-119308000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr3:119299600-119314200	Weak transcription	Brain Substantia Nigra	brain
34	chr3:119299600-119314200	Weak transcription	Psoas Muscle	Psoas
35	chr3:119299800-119303600	Weak transcription	Monocytes-CD14+_RO01746	blood
36	chr3:119299800-119303800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr3:119299800-119304000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr3:119299800-119304800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr3:119299800-119305000	Weak transcription	Sigmoid Colon	Sigmoid Colon
40	chr3:119299800-119305200	Weak transcription	Adipose Nuclei	Adipose
41	chr3:119299800-119305400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr3:119299800-119305400	Weak transcription	Stomach Smooth Muscle	stomach
43	chr3:119299800-119307200	Weak transcription	Primary hematopoietic stem cells	blood
44	chr3:119299800-119308000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr3:119299800-119308000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chr3:119299800-119309200	Weak transcription	Duodenum Smooth Muscle	Duodenum
47	chr3:119299800-119314600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr3:119299800-119314600	Weak transcription	Fetal Muscle Trunk	muscle
49	chr3:119299800-119318000	Weak transcription	Fetal Heart	heart
50	chr3:119300400-119303400	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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