Variant report

Variant	rs7828134
Chromosome Location	chr8:48976333-48976334
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:48970388..48974071-chr8:48975063..48978866,4	K562	blood:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10093943	0.85[YRI][hapmap];0.83[AFR][1000 genomes]
rs10095249	0.83[AFR][1000 genomes]
rs10097429	1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs11987748	0.83[AFR][1000 genomes]
rs17287711	0.81[AFR][1000 genomes]
rs28488251	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs28542480	0.83[AFR][1000 genomes]
rs28719542	1.00[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];0.86[YRI][hapmap];0.81[AFR][1000 genomes]
rs28751111	0.83[AFR][1000 genomes]
rs35590911	0.83[AFR][1000 genomes]
rs7002719	1.00[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];0.86[YRI][hapmap];0.81[AFR][1000 genomes]
rs7841307	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs8177999	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931032	chr8:48744329-49091359	Strong transcription Flanking Active TSS Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	esv2758156	chr8:48788293-49008014	Strong transcription Active TSS Genic enhancers Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	esv2759611	chr8:48788293-49008014	Strong transcription Active TSS Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
4	nsv427820	chr8:48788293-49008014	Strong transcription Weak transcription Active TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
5	nsv831309	chr8:48815290-48977856	Strong transcription Genic enhancers Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
6	nsv890850	chr8:48954143-49018790	Weak transcription Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
7	nsv890851	chr8:48954143-49031082	Strong transcription Weak transcription Enhancers Bivalent Enhancer Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
8	esv1793797	chr8:48955683-48992093	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
9	esv1798949	chr8:48960737-48976333	Strong transcription Weak transcription ZNF genes & repeats Enhancers Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	nsv890852	chr8:48964607-49022082	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
11	nsv890853	chr8:48964607-49031082	Enhancers Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
12	nsv1025169	chr8:48965133-49024711	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
13	nsv1020050	chr8:48965133-49028634	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
14	nsv1033298	chr8:48965133-49048832	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:99 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:48953200-48983400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr8:48958000-48980600	Weak transcription	Small Intestine	intestine
3	chr8:48961000-48976800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr8:48964800-48982400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr8:48964800-48986800	Weak transcription	NHEK	skin
6	chr8:48965400-48976400	Weak transcription	Rectal Smooth Muscle	rectum
7	chr8:48965400-48986400	Weak transcription	HSMMtube	muscle
8	chr8:48965400-48986400	Weak transcription	NHLF	lung
9	chr8:48965400-48987800	Weak transcription	K562	blood
10	chr8:48965600-48982200	Weak transcription	Psoas Muscle	Psoas
11	chr8:48965600-48984200	Weak transcription	Esophagus	oesophagus
12	chr8:48965800-48977200	Weak transcription	Brain Angular Gyrus	brain
13	chr8:48965800-48977200	Weak transcription	Brain Hippocampus Middle	brain
14	chr8:48965800-48977200	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr8:48965800-48979000	Weak transcription	Primary hematopoietic stem cells	blood
16	chr8:48965800-48979600	Weak transcription	HepG2	liver
17	chr8:48965800-48981200	Weak transcription	Brain Anterior Caudate	brain
18	chr8:48965800-48982200	Weak transcription	Aorta	Aorta
19	chr8:48965800-48982200	Weak transcription	Right Ventricle	heart
20	chr8:48965800-48985000	Weak transcription	Gastric	stomach
21	chr8:48966200-48982200	Weak transcription	GM12878-XiMat	blood
22	chr8:48967000-48977400	Weak transcription	Spleen	Spleen
23	chr8:48967200-48981400	Weak transcription	Rectal Mucosa Donor 29	rectum
24	chr8:48967600-48981800	Weak transcription	HUVEC	blood vessel
25	chr8:48968200-48977200	Weak transcription	Colon Smooth Muscle	Colon
26	chr8:48969400-48977200	Weak transcription	Skeletal Muscle Male	skeletal muscle
27	chr8:48969600-48986000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr8:48969600-48987800	Weak transcription	Ovary	ovary
29	chr8:48971800-48977000	Strong transcription	Liver	Liver
30	chr8:48972200-48976800	Strong transcription	HSMM	muscle
31	chr8:48972400-48980600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr8:48972400-48987000	Weak transcription	Stomach Smooth Muscle	stomach
33	chr8:48972600-48976800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr8:48972600-48979000	Weak transcription	Thymus	Thymus
35	chr8:48972600-48981400	Weak transcription	Lung	lung
36	chr8:48972600-48986200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr8:48972600-48986600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr8:48972800-48980800	Weak transcription	Fetal Muscle Trunk	muscle
39	chr8:48973200-48976400	Strong transcription	Primary T helper cells PMA-I stimulated	--
40	chr8:48973200-48976800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr8:48973400-48977200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
42	chr8:48973800-48982600	Weak transcription	Sigmoid Colon	Sigmoid Colon
43	chr8:48974000-48986200	Weak transcription	NH-A	brain
44	chr8:48974200-48977400	Weak transcription	Rectal Mucosa Donor 31	rectum
45	chr8:48974200-48980200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr8:48974200-48986000	Weak transcription	Muscle Satellite Cultured Cells	--
47	chr8:48974200-48987600	Weak transcription	Hela-S3	cervix
48	chr8:48974400-48986400	Weak transcription	HMEC	breast
49	chr8:48974800-48976400	Weak transcription	Primary B cells from cord blood	blood
50	chr8:48974800-48976400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood

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