Variant report

Variant	rs7832481
Chromosome Location	chr8:126097473-126097474
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:126094932..126099483-chr8:126100368..126105771,7	K562	blood:
2	chr8:126092989..126095480-chr8:126096326..126098536,2	K562	blood:
3	chr8:126093925..126097720-chr8:126099052..126104024,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000156831	Chromatin interaction
ENSG00000164961	Chromatin interaction

Extended variants
information (count: 130 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:124)

rs_ID	r²[population]
rs1004350	1.00[CHB][hapmap];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1004676	1.00[CHB][hapmap];0.96[GIH][hapmap];0.84[TSI][hapmap];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10089455	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10089574	1.00[CHB][hapmap];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10089792	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10092363	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10095627	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10105624	0.85[CHB][hapmap];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10113495	0.85[CHB][hapmap];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10505449	1.00[CHB][hapmap];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10505450	1.00[CHB][hapmap];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10505451	1.00[GIH][hapmap];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11985488	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11985490	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11985491	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11985518	1.00[CHB][hapmap];1.00[GIH][hapmap];0.91[TSI][hapmap];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11986264	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11986339	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11988640	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11989471	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11989475	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11993043	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11993478	0.85[CHB][hapmap];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11993484	0.85[CHB][hapmap];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11993487	0.85[CHB][hapmap];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11996035	1.00[CHB][hapmap];1.00[GIH][hapmap];0.91[TSI][hapmap];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11996796	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11996868	1.00[CHB][hapmap];1.00[GIH][hapmap];0.91[TSI][hapmap];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16900175	0.85[CHB][hapmap];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16900180	0.85[CHB][hapmap];1.00[GIH][hapmap];0.90[TSI][hapmap];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16900215	0.85[CHB][hapmap];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16900221	0.85[CHB][hapmap];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16900222	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16900228	0.85[CHB][hapmap];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16900250	0.85[CHB][hapmap];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16900266	0.85[CHB][hapmap];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16900269	0.85[CHB][hapmap];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16900307	0.85[CHB][hapmap];1.00[GIH][hapmap];0.90[TSI][hapmap];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16900364	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16900368	1.00[CHB][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16900369	0.83[ASW][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.91[TSI][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1802526	0.85[CHB][hapmap];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2009959	1.00[CHB][hapmap];1.00[GIH][hapmap];0.91[TSI][hapmap];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2272682	0.85[CHB][hapmap];0.96[GIH][hapmap];0.88[ASN][1000 genomes]
rs2288311	0.85[CHB][hapmap]
rs2293985	0.85[CHB][hapmap];1.00[GIH][hapmap];0.81[TSI][hapmap];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2293987	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2303521	0.85[CHB][hapmap];1.00[GIH][hapmap];0.91[TSI][hapmap];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2303524	0.85[CHB][hapmap];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2303526	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2303527	0.85[CHB][hapmap];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2303528	0.85[CHB][hapmap];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2303529	0.85[CHB][hapmap];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2303530	0.85[CHB][hapmap];0.88[ASN][1000 genomes]
rs2384917	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28386832	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28394364	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28447527	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28453073	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28465401	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28489055	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28498361	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28546275	0.88[ASN][1000 genomes]
rs28610111	0.82[ASN][1000 genomes]
rs28612575	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28624116	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28633402	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs28653090	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28685667	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28702720	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28714511	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2891636	0.83[ASW][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.84[TSI][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2891655	0.85[CHB][hapmap];1.00[GIH][hapmap];0.91[TSI][hapmap];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3736666	1.00[CHB][hapmap];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3736667	0.85[CHB][hapmap];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3763594	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3763595	0.85[CHB][hapmap];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3763596	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3765213	0.85[CHB][hapmap];1.00[GIH][hapmap];0.91[TSI][hapmap];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3765214	0.85[CHB][hapmap];1.00[GIH][hapmap];0.91[TSI][hapmap];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3793445	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3793446	1.00[CHB][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3815873	0.85[CHB][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3860841	0.85[CHB][hapmap];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3860842	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4355790	0.85[CHB][hapmap];0.96[GIH][hapmap];0.91[TSI][hapmap];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4421364	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4421365	0.85[CHB][hapmap];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4425776	0.85[CHB][hapmap];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4458896	1.00[CHB][hapmap];1.00[GIH][hapmap];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4570178	0.85[CHB][hapmap];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4570179	0.85[CHB][hapmap];1.00[GIH][hapmap];0.91[TSI][hapmap];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs57162779	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs57431630	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs57701401	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61506267	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6470329	0.88[ASN][1000 genomes]
rs6470330	1.00[CHB][hapmap];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6470331	1.00[CHB][hapmap];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6470332	1.00[CHB][hapmap];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6470333	1.00[CHB][hapmap];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6470334	1.00[CHB][hapmap];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6470335	1.00[CHB][hapmap];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6651231	1.00[CHB][hapmap];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6651232	1.00[CHB][hapmap];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6980470	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6981141	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6981156	0.83[ASW][hapmap];1.00[CHB][hapmap];0.88[GIH][hapmap];0.91[TSI][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6981164	0.85[CHB][hapmap];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6981781	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6982708	0.93[GIH][hapmap];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6989548	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7002684	0.85[CHB][hapmap];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7002783	0.85[CHB][hapmap];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72497351	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73704517	0.88[ASN][1000 genomes]
rs7465254	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7812319	1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7813244	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7817303	1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7831848	1.00[CHB][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9297710	0.85[CHB][hapmap];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9693702	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9792114	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891434	chr8:125630655-126324432	Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
2	nsv1030748	chr8:126012282-126137840	ZNF genes & repeats Enhancers Strong transcription Weak transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv539743	chr8:126012282-126137840	Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
4	nsv949614	chr8:126063646-126376699	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
5	nsv465803	chr8:126068197-126132816	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	16 gene(s)	inside rSNPs	diseases
6	nsv612148	chr8:126068197-126132816	Enhancers Active TSS Genic enhancers Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:126015400-126098000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
2	chr8:126023600-126099000	Strong transcription	Monocytes-CD14+_RO01746	blood
3	chr8:126029800-126103000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr8:126042600-126098600	Strong transcription	Primary T helper cells fromperipheralblood	blood
5	chr8:126042600-126098800	Strong transcription	Primary T cells fromperipheralblood	blood
6	chr8:126043000-126098000	Strong transcription	Fetal Thymus	thymus
7	chr8:126046600-126099600	Strong transcription	Primary B cells from peripheral blood	blood
8	chr8:126052800-126103200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr8:126064200-126102800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr8:126066600-126099400	Strong transcription	Primary B cells from cord blood	blood
11	chr8:126071800-126103000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr8:126073200-126098200	Strong transcription	Primary hematopoietic stem cells	blood
13	chr8:126073200-126098400	Strong transcription	Primary T cells from cord blood	blood
14	chr8:126083800-126097800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr8:126083800-126098000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr8:126084000-126102400	Weak transcription	Fetal Heart	heart
17	chr8:126085000-126098400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr8:126085400-126102400	Weak transcription	Pancreatic Islets	Pancreatic Islet
19	chr8:126085400-126102600	Weak transcription	Stomach Mucosa	stomach
20	chr8:126088200-126098000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr8:126088400-126098800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
22	chr8:126090800-126098000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr8:126090800-126098200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr8:126090800-126100200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr8:126090800-126102800	Weak transcription	Aorta	Aorta
26	chr8:126091000-126103000	Weak transcription	Placenta Amnion	Placenta Amnion
27	chr8:126091200-126097800	Weak transcription	Spleen	Spleen
28	chr8:126091200-126102600	Weak transcription	Fetal Brain Male	brain
29	chr8:126091200-126102600	Weak transcription	NHLF	lung
30	chr8:126091200-126103000	Weak transcription	Esophagus	oesophagus
31	chr8:126091200-126103000	Weak transcription	Pancreas	Pancrea
32	chr8:126091200-126103200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr8:126091800-126101800	Weak transcription	Fetal Intestine Small	intestine
34	chr8:126091800-126103200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr8:126093000-126102800	Weak transcription	Small Intestine	intestine
36	chr8:126093000-126103000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
37	chr8:126093200-126101800	Weak transcription	K562	blood
38	chr8:126094000-126097800	Weak transcription	Fetal Stomach	stomach
39	chr8:126094000-126098000	Weak transcription	Gastric	stomach
40	chr8:126094000-126098000	Weak transcription	Sigmoid Colon	Sigmoid Colon
41	chr8:126094000-126099000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
42	chr8:126094000-126100800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr8:126094000-126101800	Weak transcription	Thymus	Thymus
44	chr8:126094000-126102200	Weak transcription	Fetal Brain Female	brain
45	chr8:126094000-126103000	Weak transcription	Lung	lung
46	chr8:126094000-126103000	Weak transcription	Right Ventricle	heart
47	chr8:126094200-126097800	Weak transcription	Psoas Muscle	Psoas
48	chr8:126094200-126102400	Weak transcription	Rectal Smooth Muscle	rectum
49	chr8:126094400-126098000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr8:126094400-126100800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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